Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_009545.1 Length=2761 Score E Sequences producing significant alignments: (Bits) Value seq9745 277 3e-71 >seq9745 Length=7305 Score = 277 bits (306), Expect = 3e-71 Identities = 262/330 (79%), Gaps = 6/330 (2%) Strand=Plus/Minus Query 2269 CTTCCGTCGATCTGGAATTCTCCCCATTCCAGTGTGTCTCCGTCCTTGTCGATATAGGAC 2328 ||||| || ||||||||||||||||| || | ||| ||||||| ||| |||||||| ||| Sbjct 6212 CTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGAC 6153 Query 2329 TTGACATCGGAGCTTGATTTAGCTCCCTGTATGTTCGGATGGAAATGTGTTGACCGGGTT 2388 || || | |||||| |||||| ||||||||||||| ||||||||||||||||||| |||| Sbjct 6152 TTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTT 6093 Query 2389 GGGGATACAAGGTCGAAGAATCGTTTATTCGTGCAGACGTATTTCCCCTCGAATTGAATA 2448 || || ||||| |||||||||| ||||||||||| ||| ||||| |||||||| ||| Sbjct 6092 GGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATA 6033 Query 2449 AGCACGTGGAGATGAGGGCTCCCATCTTCGTGTAGC-TCTCTGCAGATTTTAATGAATTT 2507 |||||||||||| |||| || | ||| || ||| |||||||| || || ||| |||| Sbjct 6032 AGCACGTGGAGACGAGGTTCCCTGTTTTCATG-AGCTTCTCTGCAAATCTTGATGTATTT 5974 Query 2508 TTTATTTGTTGGACAAACTAGG--TTACTTAATTGGGAAAGTGTTTCTTCTTTGGTGAGA 2565 || ||| ||| | |||| || ||||| || || | ||| ||||| || ||| Sbjct 5973 CTTGTTTACTGGGGTATTTAGGTTTTGAATAATT--GAGAGAGCTTCCTCTTTTGTAAGA 5916 Query 2566 GAGCAGTGTGGGTATGTAAGAAAATAATTT 2595 |||||||| || ||||| |||||| |||| Sbjct 5915 GAGCAGTGGGGATATGTTAGAAAAATATTT 5886 Score = 205 bits (226), Expect = 2e-49 Identities = 229/306 (75%), Gaps = 0/306 (0%) Strand=Plus/Minus Query 1668 TGCGTTCTTTTCCTCTTCTAAAAACTCTGTATATGAAGAGGTTGGACCTGGATTGCAGAG 1727 ||||||||| || || || | ||||||| |||| ||| | || ||||||||||| || Sbjct 6819 TGCGTTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAG 6760 Query 1728 GAAGATAGTGGGTATCCCACCTTTAATTTGAACCGGCTTTCCGTACTTTCTGTTGCTTTG 1787 |||||| ||||| ||||| ||||||| || || ||||||||||| |||| || || Sbjct 6759 GAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTG 6700 Query 1788 CCAGTTTGTTTGGGACCCCATGAATTCTTTATAGTGCTTTAGATAGTGCGGGTCGACGTC 1847 ||| | ||| || |||||||||||| ||| | || |||| ||| |||| || |||| Sbjct 6699 CCAATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTT 6640 Query 1848 ATCTATTACGTTATACCATGCGTCGTTAGAGAACACATTAGGGTTTAAGTCTAAATGTCC 1907 ||| || ||||| ||||| || || || | || || ||| ||| || |||| || Sbjct 6639 ATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACC 6580 Query 1908 ACATAAGTAATTATGTGGCCCTAATGACCTGGCCCACAACGTTTTCCCGGTTCGACTTTC 1967 ||||||||||| ||||| |||||||| || ||||| | |||||||| |||| | || Sbjct 6579 GCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTC 6520 Query 1968 ACCTTC 1973 |||||| Sbjct 6519 ACCTTC 6514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8645168833020