Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_009546.1 Length=2757 Score E Sequences producing significant alignments: (Bits) Value seq9745 556 2e-155 >seq9745 Length=7305 Score = 556 bits (616), Expect = 2e-155 Identities = 741/1019 (73%), Gaps = 24/1019 (2%) Strand=Plus/Minus Query 1590 AATGGCTCCGTGAGGGTGATGAATTCCGCATTCTTCAATGCCCAGTCCTTTAAAGCTGAA 1649 ||||||| |||||| ||| | ||||| | | |||||| ||| | ||||| Sbjct 6875 AATGGCTGGGTGAGGAATGCGAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCG 6816 Query 1650 TTCTTTTCTTCGTCCAAGTACTCTTTATATGATGATGTTGGG-CCTGGATTGCAGAGGAA 1708 ||||| |||||||| | |||||||||| ||| |||||| ||||||||||| ||||| Sbjct 6815 TTCTTATCTTCGTCAAGAAACTCTTTATAACTTGA-GTTGGGTCCTGGATTGCAAAGGAA 6757 Query 1709 GATAGTTGGGATTCCACCTTTAATTTGAATTGGTTTCCCGTACTTAGTGTTGCTTTGCCA 1768 ||| || || || || ||||||| || || || || ||||| | | || ||||| Sbjct 6756 GATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCA 6697 Query 1769 GTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGGTAGTGGGGGTCTACGTCATC 1828 || |||| ||||||||||||||| ||||| || |||| || | || || |||| ||| Sbjct 6696 ATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATC 6637 Query 1829 TATGACGTTGTACCATGCATCATTGCTGTACACCTTTGGGCTTAAACCAAGGTGCCCACA 1888 |||||||||||||| ||||||||| ||||| |||||||||| | || || || || Sbjct 6636 AATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCA 6577 Query 1889 TAAATAATTATGTGGACCCAATGACCTGGCCCACATTGTCTTGCCGGTACGACTATCACC 1948 ||| ||||| ||||| || ||||| || ||||| ||||| || || || | | ||||| Sbjct 6576 TAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACC 6517 Query 1949 CTCTATTACAATACTTTGAGGTCTCCACGGCCGCGCAGCGGCATCCCTCACA---TTCTC 2005 |||| || ||||| ||||| |||| | ||| |||| |||||| || || Sbjct 6516 TTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCA---CTCACAACGTTTTC 6460 Query 2006 AGAGACCCAGACTTCAAGTTCTTCTGGAACTTGATCGAAAGAAGAAGAAAGAAAAGGACA 2065 |||||| ||| ||| || || || | | || | | || | ||||||| | Sbjct 6459 TTCAACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGA 6400 Query 2066 AACGAAAACCTCCAAAGGAGGTGCA---AAAATCCTATCTAAATTGGCGTTTAAATTATG 2122 ||| | | | ||| || || || ||| |||| ||||| || ||||| |||| Sbjct 6399 AACATATATTGC---AGGTGGAGCCTGGAATATCATATCCAAATTAGCATTTAATCTATG 6343 Query 2123 AAATTGAAAAATATAATCTTTTGGGAGTTTCTCCCTTATTATGTTTAATGCTGCTTCCTT 2182 ||| | ||| ||||||||||||| |||| ||||| ||||| | ||| |||||| || Sbjct 6342 AAAACGTAAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTT 6283 Query 2183 AGTAGCTGCATTTAACGCCTCTGCGCAAGCGTCGTTAGC--ATTCTGG-CAGCCTCCCCT 2239 || | | ||||| || |||||| || | || ||||| ||| | | | |||| | Sbjct 6282 AGACCCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGT 6223 Query 2240 AG---CACTTCTTCCGTCGATCTGGAAATCTCCCCATTCGATTGTGTCCCCGTCCTTGTC 2296 || || |||||| || |||||||| |||||||| || ||||| || |||| ||| || Sbjct 6222 AGTTGCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTC 6163 Query 2297 GATATAGGACTTGACGTCGGAACTGGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGC 2356 |||||| ||||| |||| ||| ||||||||| ||||||| ||||| ||||||||||||| Sbjct 6162 GATATACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGT 6103 Query 2357 TGACCTGGTTGGGGATACCAGGTCGAAGAATCTGTTATTCGTGCAGACGAATTTCCCTTC 2416 |||||||||||| || || || ||||||||||||||||||||||| | | |||||||| Sbjct 6102 TGACCTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTC 6043 Query 2417 GAACTGGAGTAACACGTGGAGATGAGGGCTCCCATCTTCGTGAAGCTCTCTGCAGATTTT 2476 ||| |||| | |||||||||| |||| || | ||| ||| |||||||| || || Sbjct 6042 GAATTGGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTT 5983 Query 2477 GATATATTTTTTGTTGGTTGGGGTTTGTATATTTTG--TAATTGGGAAAGTGCCTCTTCT 2534 ||| ||||| ||||| |||||| | || ||||| ||||| || || || || ||| Sbjct 5982 GATGTATTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAATT--GAGAGAGCTTCCTCT 5925 Query 2535 TTAGTTAGAGAGCACTGTGGATAAGTGAGGAAGTAGTTTTTAGCAGAAATTCTAAAACG 2593 || || |||||||| || ||||| || || || ||||||| |||||| | |||||| Sbjct 5924 TTTGTAAGAGAGCAGTGGGGATATGTTAGAAAAATATTTTTAGAAGAAATGCGAAAACG 5866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8632487983980