Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_009547.1 Length=2753 Score E Sequences producing significant alignments: (Bits) Value seq9745 636 3e-179 >seq9745 Length=7305 Score = 636 bits (704), Expect = 3e-179 Identities = 760/1024 (74%), Gaps = 32/1024 (3%) Strand=Plus/Minus Query 1585 AATGGCTCCGTGAGG---GTGAAGAATTCTGCATTCTTTAATGCCCAGTCTCTGATTGCT 1641 ||||||| |||||| | ||||| ||||||| | | |||||| | || ||| Sbjct 6875 AATGGCTGGGTGAGGAATGCGAAGA---CTGCATTTATGAGAGCCCAGGACTTAATAGCT 6819 Query 1642 GAATTCTTTTCCTCGTCCAAGTACTCTTTATACGATGAAGTTGGTCCTGGATTGCAAAGG 1701 | ||||| || ||||| | |||||||||| ||| | |||||||||||||||||| Sbjct 6818 GCGTTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGG 6759 Query 1702 AAGATTGTCGGGATACCTCCTTTAATTTGAATTGGTTTCCCGTA-CTTCGTGTTGCTTTG 1760 |||||||| || || || ||||||| || || || || ||||| |||| | || || Sbjct 6758 AAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTC-TATTATACTG 6700 Query 1761 CCAGTCCCTTTGGGCCCCCATGAATTCCTTGAAATGTTTCAGGTAGTGGGGGTCGACGTC 1820 ||| || |||| |||||||||||||||||| |||||||| | || | || || |||| Sbjct 6699 CCAATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTT 6640 Query 1821 ATCGATTACGTTGTACCACGCATCATTGCTGTAGACCTTTGGGCTTAGGTCCAGATGTCC 1880 ||| || ||||||||||| ||||||||| |||| |||||||||| || ||| || Sbjct 6639 ATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACC 6580 Query 1881 ACACAGATAGTTGTGTGGGCCTAGAGATCGTGCCCACATCGTCTTCCCGGTTCTACTCTC 1940 || | || ||||||||||||| |||| ||||| || || ||||| |||||| ||| Sbjct 6579 GCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTC 6520 Query 1941 ACCCTCTATGACTATACTGATCGGTCGCCAAGGCCGCGCAGCGGCATCCCTCACGTTCTC 2000 ||| |||| |||||||| || ||||| ||||| | ||| |||| | ||||| || Sbjct 6519 ACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTC 6460 Query 2001 TGACACCCAGCATTCAAGTTCTTCTGGAACTTGGTCGAAAGAAGAAGAAAGAAATGGACA 2060 | |||||| || ||| || || || | || || | | || | ||| ||| | Sbjct 6459 TTCAACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGA 6400 Query 2061 AACAAAAACCTCTATAGGAGGTGCA------AAAATCCTATCTAAATTAGCATTTAAATT 2114 |||| | ||| | ||||| | || ||| |||| |||||||||||||| | Sbjct 6399 AACATA------TATTGCAGGTGGAGCCTGGAATATCATATCCAAATTAGCATTTAATCT 6346 Query 2115 ATGAAACTGTAAAACATAATCTTTGGGAGCTAATTCCCTAATTATAT-TAAGAGCCTCTG 2173 |||||| ||||| ||||||||| || | |||||||||||| | |||| || ||| Sbjct 6345 ATGAAAACGTAAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAG-GCTGCTG 6287 Query 2174 ACTTACTGCCTGTGTTAAGTGCTGCGGCGTAAGCGTCATTGGCTGATTGTTGGCCCCCTC 2233 ||| || | || || ||| | |||||| | ||||| || |||||||| ||||||| Sbjct 6286 TTTTAGACCCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTC 6227 Query 2234 TTG------CAGATCGTCCGTCGATCTGAAACTCGCCCCACTCGAGGGTGTCTCCGTCCT 2287 ||| |||||| ||| || ||||| || || ||||| || | || ||||||| || Sbjct 6226 TTGTAGTTGCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCT 6167 Query 2288 TATCGATGTAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGTATGTTCGGATGGAAAT 2347 | ||||| || ||||| |||| ||||||||||||| ||||||||||||| |||||||||| Sbjct 6166 TCTCGATATACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAAT 6107 Query 2348 GTGCTGACCTGGTTGGGGATACCAGGTCGAAGAATCTGTTATTCGTGCAGACGTATTTTC 2407 ||| |||||||||||| || || || ||||||||||||||||||||||| ||| || | Sbjct 6106 GTGTTGACCTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCC 6047 Query 2408 CCTCGAACTGGATAAGCACGTGGAGATGAGGGCTCCCATCTTCGTGAAGTTCTCTGCAGA 2467 | ||||| |||||||||||||||||| |||| || | ||| ||| ||||||||| | Sbjct 6046 CTTCGAATTGGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAA 5987 Query 2468 TCTTGATGTATTTTTTATTTGTGGGGGTGTTTAGGTTTTG--TAGTTGGGAAAGTGCCTC 2525 ||||||||||||| || ||| ||||| ||||||||||| || || || || || || Sbjct 5986 TCTTGATGTATTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAATT--GAGAGAGCTTC 5929 Query 2526 CTCTTTGGTGAGAGAGCACTGTGGATAAGTGAGGAAATAATTTTTAGCAGATAACCTAAA 2585 |||||| || |||||||| || ||||| || || ||| |||||||| ||| | | ||| Sbjct 5928 CTCTTTTGTAAGAGAGCAGTGGGGATATGTTAGAAAAATATTTTTAGAAGAAATGCGAAA 5869 Query 2586 ACGA 2589 |||| Sbjct 5868 ACGA 5865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8619807134940