Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_009548.1 Length=2745 Score E Sequences producing significant alignments: (Bits) Value seq9745 578 7e-162 >seq9745 Length=7305 Score = 578 bits (640), Expect = 7e-162 Identities = 718/978 (73%), Gaps = 16/978 (2%) Strand=Plus/Minus Query 1601 CGAATTCTGCATTCTTTAATGCCCAATCTTTTAAAGCAGAATTTTTATCCTCATTCAAGT 1660 |||| ||||||| | | ||||| || | ||| | || ||||| || | |||| Sbjct 6856 CGAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGT-CAAGA 6798 Query 1661 A-CTCTTTATATGATGATGTTGGG-CCTGGATTGCAAAGGAAGATAGTTGGGATTCCACC 1718 | ||||||||| ||| |||||| |||||||||||||||||||| || || || || || Sbjct 6797 AACTCTTTATAACTTGA-GTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCC 6739 Query 1719 TTTAATTTGAATTGGTTTCCCGTACTTAGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCAT 1778 ||||| || || || || ||||| | | || ||||| || |||| ||||||||| Sbjct 6738 TTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCAT 6679 Query 1779 GAATTCTTTAAAGTGCTTTAGGTAGTGGGGATCTACGTCATCAATGACGTTATACCAAGC 1838 |||||| ||||| || |||| || | ||||| |||| |||||||||||| ||||| || Sbjct 6678 GAATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGC 6619 Query 1839 ATCATTACTGTATACTTTTGGGCTTAGATCAAGGTGTCCGCATAAATAATTATGTGGGCC 1898 |||||| |||| ||||||||||| |||| || |||||||| ||||| |||||||| Sbjct 6618 ATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCC 6559 Query 1899 TAATGACCTAGCCCACATTGTTTTCCCCGTCCGACTATCCCCTTCGATAACTATACTTAT 1958 |||||| |||||||| ||||||||||| || | | || ||||| | ||||||||| || Sbjct 6558 TAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCAT 6499 Query 1959 CGGTCGTAAAGGCCGCGCAGCGGAACTGACGACGTTCTCGGCAGCCCACTCCTCGAGTTC 2018 ||||| ||||| | ||| || ||| || ||||| || || |||| || | || Sbjct 6498 AGGTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAAT 6439 Query 2019 TTCTGGGACTCGATCAAAAGNNNNNNNNNNNNNNGGCGAAATATAAACCTCCAATGGAGG 2078 || || || | ||| | || |||| ||| | | ||||| Sbjct 6438 CTCCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACATATATTGCAGGTGGAGC 6379 Query 2079 TGTAAAAATCCTGTCTAAATTGGCATTTAAATTATGAAACTGTAACACATAATCTTTAGG 2138 || ||| | || ||||| |||||||| ||||||| |||| ||||||||| || Sbjct 6378 CTGGAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGG 6319 Query 2139 AGCTAGCTCCTTAATTACAT-TAAGAGCCTCCGACTTACTGCCTGCGTTAAGCGCCTGGG 2197 | ||| |||||| | |||| || | | ||| || | || || || | | Sbjct 6318 GCGTTTTTCCCTAATTATCTCTAAG-GCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTG 6260 Query 2198 CGTAAGCGTCGTTGGCTGATTGTTGACCTCCCCTTG------CAGATCGTCCGTCGATCT 2251 ||||| | || || || ||||||||||| || |||| |||||| ||| || |||| Sbjct 6259 CGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCT 6200 Query 2252 GAAATTCTCCCCATTCAATTGTGTCTCCGTCCTTGTCGATGTAGGACTTGACGTCGGAGC 2311 | ||||||||||| |||||||| ||||||| ||| ||||| || ||||| |||| ||||| Sbjct 6199 GGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGC 6140 Query 2312 TCGATTTAGCTCCCTGAATGTTTGGATGGAAATGCGCTGACCTGGTTGGGGATACCAGGT 2371 | |||||| ||||||| ||||||||||||||||| | |||||||||||| || || || | Sbjct 6139 TGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGAT 6080 Query 2372 CGAAGAATCTGTTATTCTGGCATTTGTATTTCCCTTCGAACTGGACAAGCACGTGGAGAT 2431 ||||||||||||||||| |||| |||| ||||||||||| |||| ||||||||||||| Sbjct 6079 CGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGAC 6020 Query 2432 GAGGAGACCCATCTTCGTGAAGCTCTCTGCAGATTTTGATGTATTTTTTATTCGTTGGGG 2491 |||| || | ||| ||| |||||||| || ||||||||||| || || ||||| Sbjct 6019 GAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGG 5960 Query 2492 TGTTTAGGTTTTG--TAATTGGGAAAGTGCCTCTTCTTTAGTAAGGGAGCATTGTGGATA 2549 | ||||||||||| ||||| || || || || ||||| ||||| ||||| || ||||| Sbjct 5959 TATTTAGGTTTTGAATAATT--GAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATA 5902 Query 2550 AGTGAGAAAATAATTCTT 2567 || |||||| ||| || Sbjct 5901 TGTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8594445436860