Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_009549.1 Length=2751 Score E Sequences producing significant alignments: (Bits) Value seq9745 480 1e-132 >seq9745 Length=7305 Score = 480 bits (532), Expect = 1e-132 Identities = 696/978 (71%), Gaps = 17/978 (2%) Strand=Plus/Minus Query 1595 CGAAGATTGCATTCTTTACAGCCCAATTTTTAAGTGCGCTGTTCTTTTCTTCATCCAAGA 1654 |||||| |||||| | | |||||| |||| || |||||| ||||| || | | Sbjct 6856 CGAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAA 6797 Query 1655 ACTCTTTATAGCTGGAATGTGGTCCTGGATTGCAGAGGAAGATAGTGGGAATACCCCCTT 1714 |||||||||| || || | |||||||||||||| |||||||| ||||| || || |||| Sbjct 6796 ACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTT 6737 Query 1715 TAATTTGAACTGGCTTCCCGTATTTGGTGTTGCTTTGCCAGTCTCTTTGGGCCCCCATGA 1774 ||| || || ||||| |||||| | | || ||||| || |||| ||||||||||| Sbjct 6736 TAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGA 6677 Query 1775 ACTCTTTAAAGTGCTTTAGATAGTGGGGATCGACGTCATCAATGACGTTATACCAGGCAC 1834 | || ||||| || |||| ||| | ||||| |||| |||||||||||| ||||||||| Sbjct 6676 ATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCAT 6617 Query 1835 TGTTGTTGTACACTTTTGGACTTAAATCTAAATGTCCGCATAAGTAGTTATGTGGTCCCA 1894 ||||||||| |||||| |||| ||| |||| ||||||||||| || ||||| || | Sbjct 6616 CATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTA 6557 Query 1895 AAGACCTGGCCCATATCGTCTTCCCTGTCCTACTATCGCCCTCTACCACAATACTTATCG 1954 | || || |||||||| || ||||| || ||| || || ||||| || ||||| || | Sbjct 6556 ATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAG 6497 Query 1955 GTCTTAATGGCCGCGCAGCGGCATTGACAACGTTTGCGGAAACCCATTCATTAAGTTCCT 2014 ||| |||| | ||| |||| | ||||||||| | |||||| || | ||| || Sbjct 6496 GTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCT 6437 Query 2015 CTGGAACTTGGTCGAATGAAGAAGAACAAAAAGGAGAAATGTAAATTTCTATTGGATGAG 2074 | || || | || |||| | || ||||||||||| || ||| | |||| Sbjct 6436 CCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACATATATTGCAGGTGGAGCCT 6377 Query 2075 TAAAAATCCTATCTAAATTATTATTTAAATTATGGAACTGTAAAACAAAATCTTTGGGAG 2134 || ||| |||| |||||| |||||| |||| || ||||| | ||||||| || Sbjct 6376 GGAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGGGC 6317 Query 2135 CTTTCTCCCTTAATATATTGAGGGCCGATGCTTTGGCCCCTGAATTGAGTGCCTCGGCAT 2194 ||| ||||| | ||| | | ||| | || ||| | ||| ||||| || || || || | Sbjct 6316 GTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGT 6257 Query 2195 ATGCGTCGTTGGCAGATTGGCAACCTCCTC------TAGCCGATCGTCCATCGATCTGGA 2248 | | || || || ||||| ||| |||| | || |||| |||||| ||||||| Sbjct 6256 AAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGA 6197 Query 2249 AAATTCCATGATCAAGCACGTCTCCGTCTTTTTCCATGTATGATTTAACATCTGATGAGC 2308 | ||| ||||| ||||||| || || || || || || || | | |||| Sbjct 6196 ATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGT---AGGAGC 6140 Query 2309 T---TTTAGCTCCCTGAATGTTTGGATGGAAATGTGCTGACCTGGTTGGGGATATGAGAT 2365 | |||| ||||||| ||||||||||||||||||| |||||||||||| || | |||| Sbjct 6139 TGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGAT 6080 Query 2366 CGAAGAATCTTTGATTTTTACACTGGAATTTCCCTTCGAATTGGATGAGGATATGCAGGT 2425 |||||||||| | ||| | || | | ||||||||||||||||| || | || || Sbjct 6079 CGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGAC 6020 Query 2426 GAGGAGTTCC--ATCTTCGTGGAGTTCCCTGCAGATTCTGATGAATAATTTAGAAATTGG 2483 ||| ||||| | ||| || ||| ||||| || ||||| || || | ||| Sbjct 6019 GAG--GTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGG 5962 Query 2484 TGTTTCTAGGGCTTTAATTTGGGAAAGTGCCTCCTCTTTGGTAAGAGAACAGCGTGGATA 2543 || | |||| || ||| || || || |||||||| |||||||| ||| | ||||| Sbjct 5961 GGTATTTAGGTTTTGAATAATTGAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATA 5902 Query 2544 TGTGAG-GAAATAGTTTT 2560 ||| || ||||| |||| Sbjct 5901 TGTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8613466710420