Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_009550.1 Length=2740 Score E Sequences producing significant alignments: (Bits) Value seq9745 484 1e-133 >seq9745 Length=7305 Score = 484 bits (536), Expect = 1e-133 Identities = 691/975 (71%), Gaps = 14/975 (1%) Strand=Plus/Minus Query 1591 CGAAGGTTGCATTCTTTAAAGCCCAGGCTTTTAATGCGCTGTTCCGCTCTTCGTCTAGGT 1650 ||||| |||||| | | |||||||| || | || |||| |||||||| || Sbjct 6856 CGAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAA 6797 Query 1651 ACTCTTTATATGATGACGTTGGG-CCTGGATTGCAGAGGAAGATTGTTGGGATGCCACCT 1709 |||||||||| ||| |||||| ||||||||||| ||||||||||| || || || ||| Sbjct 6796 ACTCTTTATAACTTGA-GTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCT 6738 Query 1710 TTAATTTGAATGGGCTTCCCGTACTTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATG 1769 |||| || || |||||| ||||| || | || ||||| || |||| |||||||||| Sbjct 6737 TTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATG 6678 Query 1770 AATTCTTTAAAGTGCTTTAGATAGTGGGGGTCTACGTCATCAACCACGTTGTACCATGCC 1829 ||||| ||||| || |||| ||| | || || |||| ||||| ||||||||||| || Sbjct 6677 AATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCA 6618 Query 1830 TCGTTGCTGTACACCTTGGGGCTCAAGTCAAGGTGCCCACACAAATAATTATGTGGACCC 1889 || ||| ||||| || ||||| | ||| || || || || ||||| ||||| || Sbjct 6617 TCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCT 6558 Query 1890 AAAGACCTAGCCCACATGGTCTTGCCGGTCCTACTATCACCCTCAATAACAATACTAACC 1949 || || |||||||| || || || || || ||| ||||| || | ||| ||||| | Sbjct 6557 AATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATA 6498 Query 1950 GGTCTCCAAGGCCGCGCAGCGGCACCCATGACATTTTCGGACACCCAGCACTCAAGT-TC 2008 |||| ||||| | ||| ||||| || || ||||| |||||| | ||| || Sbjct 6497 GGTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATC 6438 Query 2009 TTCGGGAACTTGATCAAAAGNNNNNNNNNNNNNNNNNNAAATATAAACCTCCAATGGAGG 2068 | ||| | ||| | ||| | ||| ||| | | ||||| Sbjct 6437 TCCGGTACGTTGTT-AAATGTACTGGATACAAAAGGAGAAACATATATTGCAGGTGGAGC 6379 Query 2069 TGTAAAAATCCTATCTAAATTACNNNNNNNNNTATGAAATTGAAAAATATAATCTTTTGG 2128 || ||| |||| |||||| ||||||| | ||| |||||||||||| Sbjct 6378 CTGGAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGG 6319 Query 2129 GAGTTTCTCCCTTATTATTGACATGGCCGCCTCTTTAGAACCTGCGTTTAACGCCTCTGC 2188 | |||| ||||| ||||| | ||| || |||||| || | |||| || ||||| Sbjct 6318 GCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGC 6259 Query 2189 ACATGCGTCGTTAGCGTTCTGGCAACCTCCTCTAGCACTT------CTTCCGTCGATCTG 2242 | | || ||||| || ||| ||||| | | || ||||| || ||||| Sbjct 6258 GTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTG 6199 Query 2243 GAATTCTCCCCAGTCGAGGGTGTCTCCATCCTTCTCCATATAGGACTTGACGTCGGAGCT 2302 |||||||||||| || | || ||||| | |||||| ||||| ||||| |||| |||||| Sbjct 6198 GAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCT 6139 Query 2303 GGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGATACCAGATC 2362 ||||||| ||||||| ||||| ||||||||||||| |||||||||||| || || ||||| Sbjct 6138 GGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATC 6079 Query 2363 GAAGAATCGGTTATTCGTGCAGACGAATTTCCCTTCGAATTGCACGAGCACATGGAGATG 2422 |||||||| |||||||||||| | | |||||||||||||| | ||||| |||||| | Sbjct 6078 GAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACG 6019 Query 2423 AGGGCTCCCATCTTCGTGTAGTTCTCTACAGATTTTAATGAATTTTTTATTTGTTGGGG- 2481 ||| || | ||| || |||||| || || || ||| |||| || ||| ||||| Sbjct 6018 AGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGT 5959 Query 2482 -TTTCGATATTCTGTAATTGGGAAAGAGCTTCTTCTTTTGTTAGAGAGCAATGTGGATAT 2540 ||| | | || ||||| || |||||||| |||||||| |||||||| || |||||| Sbjct 5958 ATTTAGGTTTTGAATAATT--GAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATAT 5901 Query 2541 GTAAGGAAATAATTT 2555 || || ||| |||| Sbjct 5900 GTTAGAAAAATATTT 5886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8578594375560