Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_009553.1 Length=2752 Score E Sequences producing significant alignments: (Bits) Value seq9745 462 4e-127 >seq9745 Length=7305 Score = 462 bits (512), Expect = 4e-127 Identities = 676/951 (71%), Gaps = 21/951 (2%) Strand=Plus/Minus Query 1637 TTAAT-GCTGAGTTTTTCTCTTCATCCAAGAATTCTTTATAGCTAGAGTTGGGTCCTGGA 1695 ||||| |||| ||| || ||||| || | || |||||||| || ||||||||||||||| Sbjct 6827 TTAATAGCTGCGTTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGA 6768 Query 1696 TTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCGTATTTAGTG 1755 ||||| |||||||| ||||| || |||||||||| || || |||||||||||| | | Sbjct 6767 TTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTA 6708 Query 1756 TTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGATAGTGGGGG 1815 || ||||| || |||| ||||||||||||||| ||||| || |||| ||| | || Sbjct 6707 TTATACTGCCAATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGA 6648 Query 1816 TCGACGTCATCGATGACGTTATACCAGGCATCATTATTGTATACCTTTGGACTGAGATCA 1875 || |||| ||| |||||||| |||||||||||||| ||||| ||||| || | |||| Sbjct 6647 TCAACGTTATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCA 6588 Query 1876 AGGTGACCACAGAGATAATTATGTGGGCCTAATGATCTTGCCCACATCGTCTTTCCTGTT 1935 ||||| || | ||||| ||||||||||||||||| ||||| || || || || ||| Sbjct 6587 TAATGACCGCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTT 6528 Query 1936 CTACTATCACCTTCAATTACTATACTCATGGGTCTCAATGGCCGCGCAGCGGCACTGACG 1995 ||| |||||||| | ||||||||||| |||| |||| | ||| |||||| || Sbjct 6527 CTAGCCTCACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCACA 6468 Query 1996 ACATTCTCGGCAGCCCATTCCTCAAGTTCCTCTGGAACTTGATCGAAAGAAGAAGATAAA 2055 || || || || |||| || | ||| ||| || || | | || | | |||| | Sbjct 6467 ACGTTTTCTTCAACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACTGGATACA 6408 Query 2056 AAAGGAGAAATATATTCCTCTATTGGAGGAGTAAAAATCCTATCTAAATTAGAATTTAAA 2115 |||||||||| |||| | ||||| || ||| |||| ||||||| |||||| Sbjct 6407 AAAGGAGAAACATATATTGCAGGTGGAGCCTGGAATATCATATCCAAATTAGCATTTAAT 6348 Query 2116 TTATGAAACTGTAAAACAAAATCTTTAGGAGCCTTCTCCTTTAATATATTGAGGGCCGCT 2175 ||||||| ||||| | ||||||| || || ||| | | ||| | | ||| ||| Sbjct 6347 CTATGAAAACGTAAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAGGCTGCT 6288 Query 2176 GCTTTGGACCCTGAATTGATTGCCTCGGCATATGCGTCGTTGGCAGATTGGCAACCTCCT 2235 | ||| ||||| ||||| | || || || || | || || || ||||| ||| ||| Sbjct 6287 GTTTTAGACCCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCT 6228 Query 2236 C------TAGCTGATCTTCCATCGATCTGGAAAACTCCATGATCAAGCACGTCTCCGTCT 2289 | | || ||||||||||| |||||||| |||| ||||| ||||||| Sbjct 6227 CTTGTAGTTGCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGC 6168 Query 2290 TTTTCCATGTATGCTTTAACATCTGTTGAGCT---TTTAGCTCCCTGAATGTTCGGATGG 2346 || || || || | || || | ||||| |||| ||||||| ||||| |||||| Sbjct 6167 TTCTCGATATACGACTTCACGT---AGGAGCTGGATTTACCTCCCTGTATGTTTGGATGG 6111 Query 2347 AAATGTGCTGACCTGCTTGGGGATGTGAGATCGAAGAATCTGTTGTTTTGGCATTTGAAT 2406 ||||||| ||||||| |||| || ||||||||||||||||| || |||| || | Sbjct 6110 AAATGTGTTGACCTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTAC 6051 Query 2407 TTGCCTTCGAACTGGATGAGGACATGCAGGTGAGGAGACCCATCTTCGTGTAGTTCCCTG 2466 || |||||||| ||||| || || || || |||| || | ||| || ||| ||| Sbjct 6050 TTCCCTTCGAATTGGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTG 5991 Query 2467 CAAAT----ACGTATGAATAATTTATTAGTCGGTGTTGATAGGGCTGAGATTTGGGAAAG 2522 ||||| | |||| | |||| | | ||| || |||| | || || || Sbjct 5990 CAAATCTTGATGTATTTCTTGTTTACTGG--GGTATT--TAGGTTTTGAATAATTGAGAG 5935 Query 2523 TGCCTCTTCTTTAGTAAGGGAGCACTGTGGATAAGTGAGGAAATAATTCTT 2573 || || ||||| ||||| ||||| || ||||| || || ||| ||| || Sbjct 5934 AGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATATGTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8616636922680