Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_009606.1 Length=2611 Score E Sequences producing significant alignments: (Bits) Value seq9745 367 2e-98 >seq9745 Length=7305 Score = 367 bits (406), Expect = 2e-98 Identities = 679/990 (69%), Gaps = 27/990 (3%) Strand=Plus/Minus Query 1471 CGAAGATTGCATTCTTGAGTGTCCAATTTTTGAGTGATGTGTTTTCTTCTTTGTTTAGGT 1530 |||||| |||||| |||| | ||| || | | || ||| | |||| || || Sbjct 6856 CGAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAA 6797 Query 1531 AATCTTTATAGCTGGCACCCTCACCAGGATTGCAAAGCACGATTGATGGGATCCCACCTT 1590 | |||||||| || | || ||||||||||| | ||||| || ||||| |||| Sbjct 6796 ACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTT 6737 Query 1591 TAATTTGAACTGGCTTGCCATACTTGCAATTTGACTGCCAGTCTTTCTGGGCCCCCAGAA 1650 ||| || || ||||| || || | | ||| ||||||| || | | |||||||| | Sbjct 6736 TAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGA 6677 Query 1651 GTTCTTTCCAGTGCTTTAGCTTTAGATATTGCGGTGTGACGTCGTCAATGACGTTATACT 1710 ||| || | || |||| ||| |||| |||| ||||||||||| ||| Sbjct 6676 ATTCCTTAAAATGTTTTAA------ATAACGCGGATCAACGTTATCAATGACGTTGTACC 6623 Query 1711 CCACTTCATTAGAGAACACTCTGGAATTGAAGTCGAGATGTCCACTGAGATAATTATGTG 1770 | ||||| | || | | | | | || ||| || | | ||||| |||| Sbjct 6622 AGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTG 6563 Query 1771 GGCCTAATGCCCGAGCCCACATCGTCTTCCCTGTCCTAGAATCACCTTCTATGATAATAC 1830 ||||||||| | |||||| || || ||||| || |||| |||||||||| | |||| Sbjct 6562 GGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATAC 6503 Query 1831 TAATAGGTCTCTCTGGCCGCGCAGCTGAATCCTTTCCAAAATAATCATCTGCCCATTCTT 1890 | ||||||| | |||| | ||| | | | ||| | || || |||| |||| Sbjct 6502 TCATAGGTCGGTGAGGCCTCCCAGAGGCACTCA---CAACGTTTTCTTCAACCCAGTCTT 6446 Query 1891 GCATCTCGTCCGGAACGTTAGTGAAAGAAGAGAGTTGAAACGGAGGAACCCAGCGTTCCG 1950 | | ||||| ||||| | || | | | | ||| |||| ||| | | | | Sbjct 6445 GAAGAATCTCCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACATATATTGCAG 6386 Query 1951 G---AGCCTTTTTGAATATTTTAGCCGCGTTAGCGACTAGGTTATGATGTTGAAGGAAGA 2007 | ||||| |||||| || || ||||| || ||||| | | | Sbjct 6385 GTGGAGCCTG---GAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAAT 6329 Query 2008 AATGTTGTGGTTGTTCTTCCCGTATGATTCGCATTGCTTCGTCTGCACATGCTGCATTCA 2067 ||| || ||| ||| ||||| || || | ||| | | | | | | ||| | Sbjct 6328 AATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACCCAGAATTTA 6269 Query 2068 ACGCCTTGGCATATGTGTCGTTTGTAGATTGTTTACCTCCTCTGG------CAGATCTAC 2121 || | || || || || | ||||||| ||| ||||| | ||||||| | Sbjct 6268 GGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTC 6209 Query 2122 CGTCGATCTGGAATTGTCCCCATTCGATTGTATCTCCATCCTTGTCGATGTAGGACTTGA 2181 | || |||||||||| |||||| || ||||||||||| | ||| ||||| || ||||| | Sbjct 6208 CATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCA 6149 Query 2182 CGTCGGAACTTGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTAGGGG 2241 ||| ||| || |||||| ||||||| ||||| ||||||||||||| ||||||||| || | Sbjct 6148 CGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAG 6089 Query 2242 ACACCAGATCGAAGAATCTGTTATTCGTGCACTGGTATTTGCCTTCGAACTGGATAAGGA 2301 | || |||||||||||||||||||||||||| ||| || |||||||| |||||||| | Sbjct 6088 AGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCA 6029 Query 2302 CGTGGAGATGAGGTTCCCCATTCTCGTGGAGCT-CTCTGCAGATCTTGATGAATTTCTTG 2360 |||||||| ||||||||| || || || |||| ||||||| ||||||||| |||||||| Sbjct 6028 CGTGGAGACGAGGTTCCCTGTTTTCATG-AGCTTCTCTGCAAATCTTGATGTATTTCTTG 5970 Query 2361 TTAACCGGAATTGTTAGGTTTTG--TAATTGGGAAAGTGCTTCTTCTTTTGTAAGAGAAC 2418 || || || | |||||||||| |||||| || || |||| |||||||||||||| | Sbjct 5969 TTTACTGGGGTATTTAGGTTTTGAATAATTGAGAGAG--CTTCCTCTTTTGTAAGAGAGC 5912 Query 2419 ACTGGGGATATGTGAGAAAATAGTTTTTAG 2448 | ||||||||||| |||||| ||||||| Sbjct 5911 AGTGGGGATATGTTAGAAAAATATTTTTAG 5882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8169636994020