Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_009607.1 Length=2593 Score E Sequences producing significant alignments: (Bits) Value seq9745 297 3e-77 >seq9745 Length=7305 Score = 297 bits (328), Expect = 3e-77 Identities = 654/962 (68%), Gaps = 50/962 (5%) Strand=Plus/Minus Query 1529 CCAGGATTGCAAAGCACGATGCATGGGATACCACCTTTAATTTGAACTGGCTTTCCGTAT 1588 || ||||||||||| | ||| || || || ||||||| || || |||||||||||| Sbjct 6773 CCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTAT 6714 Query 1589 TTGCAGTTTGATTGCCAATC-CTTTTGGGCCCCAAGCAATTCTTTCCAGTGCTTTAACTT 1647 | | || | |||||||| ||||||| ||||| | ||||| || | || ||||| Sbjct 6713 CTTCTATTATACTGCCAATCACTTTTGGCCCCCATG-AATTCCTTAAAATGTTTTAA--- 6658 Query 1648 TAGATAGTGCGGTGCGATGTCATCAATGACGTTATATTCAACATGATTTGAATAAACCCT 1707 ||| |||| | | || |||||||||||| || ||| ||| || | Sbjct 6657 ---ATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTT 6601 Query 1708 AGGATTGAAATCTAGGTGTCCACTCAAATAATTATGGGCCCCTAATGCACGTGCCCACAT 1767 || | | ||| || || | || ||||| || | ||||||| | ||||| || Sbjct 6600 TGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATAT 6541 Query 1768 CGTCTTTCCCGTTCGAGAATCACCTTCAATGATGATACTAATAGGTCGTTCCGGCCGCGC 1827 || || || |||| || |||||||| | | ||||| |||||||| | |||| | | Sbjct 6540 TGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCC 6481 Query 1828 AGCGGCACCTCTCCCAAAAGAGTCATCTGCCCAAGCTTGCATC-TCTCTCGGTACGCTAG 1886 || ||||| || ||| || || |||| |||| | |||| ||||||| | Sbjct 6480 AGAGGCAC---TCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCTC-CGGTACGTTGT 6425 Query 1887 TGAAAGA---GGAGA-----GGGGAAACGTAGGGGCCCATGGCTCC-GGAGCCCTTGTAA 1937 | || | ||| | || ||||| || || || |||||| || || Sbjct 6424 TAAATGTACTGGATACAAAAGGAGAAACATAT------ATTGCAGGTGGAGCC--TGGAA 6373 Query 1938 ATATCCTATCTAAATTACTATTTAGATTGTGAAACTG-AAATAAGAACTTTTCAGGCAGC 1996 |||| |||| |||||| ||||| | ||||| | |||||| || ||| ||| | Sbjct 6372 -TATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGGGC-GT 6315 Query 1997 TTCTCACGGATTATCTGCAAGGCGACGTCTTTGGAAGGTGCGTTCAAGGCTTCTGCGGCA 2056 || || | ||||||| ||||| | ||| || | || | |||||||||| | Sbjct 6314 TTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGTAA 6255 Query 2057 GCGTCGTTAGCTGTCTGGCAACCGCCTCTAGCACTT------CTTCCGTCGATTTGGAAT 2110 | || ||||| | || ||| ||||| | | || ||||| || || |||||| Sbjct 6254 ACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAAT 6195 Query 2111 TCCCCCCACTCGATAGTATCTCCGTCCTTATCGACATAGGATTTGACGTCGGACGATGAC 2170 || ||||| || || |||||||||| ||| |||| ||| || || |||| ||| || Sbjct 6194 TCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTGGAT 6135 Query 2171 TTAGCTCTCTGAATGTTCGGATGGAAATGTGTTGACCTTGTTGGGGAGACCAGGTCGAAG 2230 ||| ||| ||| ||||| |||||||||||||||||||| ||||| ||||| || |||||| Sbjct 6134 TTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCGAAG 6075 Query 2231 AATCGTTGATTTTGGCAGCAGTAGTTGCCCTCAAATTGAAGAAGCACGTGGAGATGAGGC 2290 |||| | ||| ||| ||| || || || ||||| | ||||||||||||| |||| Sbjct 6074 AATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACGAGGT 6015 Query 2291 TCCCCATTTTCATGGAGC-TCTCTGCAAACCTTGATGAACTTCTTATTTGTAGGAGTGTT 2349 |||| ||||||| |||| |||||||||| ||||||| | ||||| ||| || || || Sbjct 6014 TCCCTGTTTTCAT-GAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGTATT 5956 Query 2350 TAGGGTTT--TTAATTGGGAAAGTGCTTCTTCTTTCGATAATGAGCATTTGGGATATGTG 2407 |||| ||| ||||| || || ||||| ||||| | | ||||| | ||||||||| Sbjct 5955 TAGGTTTTGAATAATT--GAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATATGTT 5898 Query 2408 AGGAAATAATTCTTCGCTTTTATTTGAAAGCGCTTTGGAGCT-GATGGCATATTTGTAAA 2466 || ||| ||| || | || |||| || || || | |||||||||||||| Sbjct 5897 AGAAAAATATTTTTAGAAGAAATGCGAAAACG----AGAACTCGTTGGCATATTTGTAAG 5842 Query 2467 TA 2468 || Sbjct 5841 TA 5840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8112573173340