Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_009644.1 Length=2677 Score E Sequences producing significant alignments: (Bits) Value seq9745 197 2e-47 >seq9745 Length=7305 Score = 197 bits (218), Expect = 2e-47 Identities = 434/646 (67%), Gaps = 16/646 (2%) Strand=Plus/Minus Query 1511 GCCCAGTCATTGATTGCTTTGTTCTTTTCCTCTTCGAAGAACTCCTTATATGATGAAGTA 1570 |||||| || || ||| |||||| || || || | ||||| ||||| ||| | Sbjct 6836 GCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTG 6777 Query 1571 GGCCCAGGATTGCAGAGGAAGATTGTTGGAATCCCTCCATTTATTTGAATTGGTTTGCCG 1630 || || |||||||| ||||||||||| || ||||| || || | || || || || ||| Sbjct 6776 GGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCG 6717 Query 1631 TACTTGCAGTTGGACTGCCAGTCTCTCTGGGCCCCCATAAATTCCTTCATATGCTTTAGA 1690 || | | || ||||||| || || | ||||||||| |||||||| | ||| |||| | Sbjct 6716 TATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAA 6657 Query 1691 TAGTGCGGGTCGACATCATCAATGACGTTGTACCAGGCCTCATTTGAATACACTTTTGGG 1750 || |||| || || | ||||||||||||||||||||| ||||| ||| ||||||| Sbjct 6656 TAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGG 6597 Query 1751 CTTAGATCAAGATGTCCACAAAGATAATTGTGACGACCCAAACTTCTGGCCCATAATGTT 1810 |||| |||| ||| || || | |||||||| | || || ||| ||||||| |||| Sbjct 6596 CTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTT 6537 Query 1811 TTCCCTGTCCTAGATGGACCTTCAATGATAATAGATATCGGCCTAAAGGGCCGCGCAGCG 1870 ||||| || |||| |||||| | | ||| || || | |||| | ||| | Sbjct 6536 TTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAG 6477 Query 1871 GCATCCATTATATTATCGTTAACCCACTGATTAATAACAGCAGGAACGTTATTAAACGAT 1930 ||| || | || || | |||||| | | || || | || ||||| ||||| | Sbjct 6476 GCACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATG-- 6419 Query 1931 GATAGTGGGAACGGTGGCTCAAAAACAT-TAACTGGAGGAGC---AAAGATCCTCTCCAA 1986 || ||| || | ||| | || | | || ||||| || ||| | ||||| Sbjct 6418 --TACTGGATACAAAAGGAGAAACATATATTGCAGGTGGAGCCTGGAATATCATATCCAA 6361 Query 1987 ATTTTGATTAAGATTATGAAATTGTAATACATAATCCTTTGGAACTAACTCCTTAATGAT 2046 ||| ||| | ||||||| |||| |||||| ||||| | ||| |||| || Sbjct 6360 ATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGGGCGTTTTTCCCTAATTAT 6301 Query 2047 AT-TAAGAGCCTCGTCCTTACTTCCGCTGTTAAGCGCCTTTGCATAAGCCTCATTAACTG 2105 | |||| || | ||| || || || || | ||| ||| | |||||| | | Sbjct 6300 CTCTAAG-GCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCG 6242 Query 2106 TCTGTTGACCGCCTC------TCGCCGATCTTCCGTCCACCTGGAA 2145 |||||||| |||| | || |||||||| |||| |||||| Sbjct 6241 ATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAA 6196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8378871003180