Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_009645.1 Length=2731 Score E Sequences producing significant alignments: (Bits) Value seq9745 306 6e-80 >seq9745 Length=7305 Score = 306 bits (338), Expect = 6e-80 Identities = 614/896 (69%), Gaps = 16/896 (2%) Strand=Plus/Minus Query 1612 GAAGATAGCATTTTTTAAAGCCCACTCTTTGAGACTCGCATTATTCTCTTCGTCGAGGAA 1671 ||||| |||||| | | |||||| || | | || || || |||||||| || || Sbjct 6855 GAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAAA 6796 Query 1672 CATTTTATAAGAGGATCTGGGTCCCGCATTACAGAGAAAGATGGTGGGGATGCCACCTTT 1731 | ||||||| || ||||||| | ||| || || ||||| ||||| || || ||||| Sbjct 6795 CTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTT 6736 Query 1732 AATTTGAGTGGGCTTTCCGTATTTCACGTTGCTTTGCCAGTC-CTTTTGCGCGCCCATGA 1790 || || | ||||||||||||| | || ||||| || |||||| || ||||||| Sbjct 6735 AACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTG-GCCCCCATGA 6677 Query 1791 ATTCTTTGAAATGTTTCAGATAATGCGGATCGACGTCATCGATTACGTTGTACCACGCAT 1850 |||| || |||||||| | |||| ||||||| |||| ||| || ||||||||||| |||| Sbjct 6676 ATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCAT 6617 Query 1851 CATTTGAATAAACTTTGGCGCTTAGATCCAAATGGCCGCACAAATAATTGTGCCGACCGA 1910 |||| || ||| | ||||| ||| |||| ||||| || |||||||| | || | Sbjct 6616 CATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTA 6557 Query 1911 GCGACCTCGCCCACATGGTTTTACCCGTACGTGACTCACCCTCAACCACTATACTAATAG 1970 || || ||||| || ||||| || || | | |||||| || || |||||||| |||| Sbjct 6556 ATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAG 6497 Query 1971 GTCTGAATGGCCGCGCAGCGGGGCACACCACGTTTTCAGCTGCCCATGACGTCAA-TGTC 2029 ||| | |||| | ||| || | ||| |||||||| | |||| | | | || || Sbjct 6496 GTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCA-GTCTTGAAGAATC 6438 Query 2030 TCAGGGACATTATTGAATG-ATTCAATACTGAATGGTGTTTCATACACTGTTGGCGGTG- 2087 || || || || || |||| | | |||| || || | |||| | || || || | Sbjct 6437 TCCGGTACGTTGTTAAATGTACTGGATAC-AAAAGGAGAAACATATATTGCAGGTGGAGC 6379 Query 2088 GTGCAAAAAGAAAGTTCAGATTGGCTCTGATATTGTGCAAATGGATTATGA-AGTCTCTC 2146 || || | | | | || ||| || | | | || ||| | | || | | ||| | Sbjct 6378 CTGGAATATCATA-TCCAAATTAGCATTTAATCTATGAAAACGTA-AATAATAATCTTTT 6321 Query 2147 GACGCTTTCTCCTTCAATATATTGAGGGCCGATGTTGTATCGCCTGAATTGATTGCTTCG 2206 | ||| ||| | | ||| | | ||| | |||| || || ||||| | ||||| Sbjct 6320 GGGCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACCCAGAATTTAGGGCTTCT 6261 Query 2207 GCATATGCGTCATTTGCACATTGAGAACCTCCTC---TATTT---GATCTCCCGTCGATC 2260 || || | ||||| || |||| ||| |||| || || ||||| || || ||| Sbjct 6260 GCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATC 6201 Query 2261 TGGAAAATTCCAAAATCTATGACGTCTCCGTCTTTCTCCATGTACTTTTTAACATCTGAG 2320 ||||| ||| |||| || ||||||| ||||| || ||| || || | ||| Sbjct 6200 TGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAG 6141 Query 2321 CTGCTCTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTTCGGATACGAGG 2380 ||| ||| ||||||| ||||| ||||||||||||| |||||||||| || || || Sbjct 6140 CTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGA 6081 Query 2381 TCGAAGAACCTTTCGTTGCGGCACTGGAATTTTCCTTCAAATTGAAGCAGAACATGGAGG 2440 |||||||| || | || ||| | | || ||||| ||||| | || || ||||| Sbjct 6080 TCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGA 6021 Query 2441 TGAGGTTCCCCATTTTCATGGAACTCACGACAAACTCTGATGAATTTCTTGTTGAC 2496 ||||||||| |||||||| || | |||| ||||| |||||||||| || Sbjct 6020 CGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTAC 5965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8550062465220