Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_010238.1 Length=2756 Score E Sequences producing significant alignments: (Bits) Value seq9745 583 2e-163 >seq9745 Length=7305 Score = 583 bits (646), Expect = 2e-163 Identities = 711/969 (73%), Gaps = 14/969 (1%) Strand=Plus/Minus Query 1619 GCATTCTTTAAAGCCCAATTCTTGAGTGCAGCATTCTTCTCTTCATCCAAGAACACTTTA 1678 ||||| | | |||||| ||| | || || ||||| ||||| || | ||| ||||| Sbjct 6848 GCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAAACTCTTTA 6789 Query 1679 TAACTGGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGT 1738 ||||| || ||||||||||||||||| |||||||| ||||| || |||||||||| || Sbjct 6788 TAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTTAA 6729 Query 1739 TCTGGCTTTCCGTACTTTGTATTTGAAAGCCAGTCCCTTTGGGCCCCCATGAATTCTTTA 1798 ||||||||||| || |||| | |||| || |||| ||||||||||||||| ||| Sbjct 6728 AAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAATTCCTTA 6669 Query 1799 AAGTGCTTTAGGTAGTGGGGATCGACGTCATCAATGATATTGTACCAGGCATCATTATTG 1858 || || |||| || | ||||| |||| |||||||| ||||||||||||||||| ||| Sbjct 6668 AAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATCATTGTTG 6609 Query 1859 TAGACCTTAGGGCTAAGGTCTAGATGTCCACACAAATAATTATGTGGTCCCAGTGACCTA 1918 || || ||||| | || ||| || || || ||||| ||||| || | ||| ||| Sbjct 6608 TACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAATGATCTA 6549 Query 1919 GCCCACATTGTCTTCCCTGTCCTACTATCACCCTCAATCACTACACTTATTGGTCTATTG 1978 ||||| ||||| ||||| || ||| ||||| || | |||| ||| || |||| | Sbjct 6548 GCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGGTCGGTGA 6489 Query 1979 GCCCGCGCAGCGGCACTGACGACGTTCTCGGCAGCCCATTCCTCAAGTTCTTCCGGAACT 2038 | || | ||| |||||| || ||||| || || |||| || | ||| ||||| || Sbjct 6488 GGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCTCCGGTACG 6429 Query 2039 TGATCAAAAGNNNNNNNNNNNNNNNNNNNNACATAAACCTCCAGAGGAGG-TGTATAAAT 2097 | | ||| | ||||| | | | |||| || | | || Sbjct 6428 TTGTTAAATGTACTGGATACAAAAGGAGAAACATATATTGCAGGTGGAGCCTGGA-ATAT 6370 Query 2098 CCTATCTAAATTAGCATTTAAATTATGGAATTGTAATACATAATCTTTTGGAGCTAACTC 2157 | |||| |||||||||||||| |||| || |||| |||||||||||| | || Sbjct 6369 CATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGGGCGTTTTTC 6310 Query 2158 CTTAATGAT-TCTAAGAGCCTCTGACTTACTGCCTGCGTTAAGCGCTGCGGCGTAAGCGT 2216 | |||| || |||||| || ||| ||| || | || || ||| | |||||| | | Sbjct 6309 CCTAATTATCTCTAAG-GCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGTAAACAT 6251 Query 2217 CGTTGGCTGTCTGTTGTCCCCCTCTAG------CAGATCGTCCGTCGATCTGAAACTCTC 2270 | || || | ||||| |||||||| | |||||| ||| || ||||| || |||| Sbjct 6250 CATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAATTCTC 6191 Query 2271 CCCAGTCGAGGGTGTCTCCGTCCTTCTCCATATAGGACTTGACATCGGAGCTTGATTTAG 2330 |||| || | || ||||||| |||||| ||||| ||||| || | |||||| |||||| Sbjct 6190 CCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTGGATTTAC 6131 Query 2331 CTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGATACGAGGTCGAAGAATC 2390 ||||||| ||||| ||||||||||||| |||||||||||| || || || |||||||||| Sbjct 6130 CTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCGAAGAATC 6071 Query 2391 TGTTATTTTTGCACTTGTATTTGCCTTCGAACTGGATGAGCACGCGAAGATGAGGTTCCC 2450 ||||||| |||| |||| || |||||||| ||||| |||||| | ||| ||||||||| Sbjct 6070 TGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACGAGGTTCCC 6011 Query 2451 CATTTTCATGAAGCTCTCTGCAGATTTTAATGTATTTTTTGTTTACTGGGGTTTGTAGGT 2510 ||||||||| |||||||| || || |||||||| |||||||||||||| | ||||| Sbjct 6010 TGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGTATTTAGGT 5951 Query 2511 TTTG--TAGTTGGGAAAGTGCTTCCTCTTTAGTAAGGGAGCATTTGGGATAAGTAAGGAA 2568 |||| || ||| || || |||||||||| ||||| ||||| | |||||| || || || Sbjct 5950 TTTGAATAATTGAGAGAG--CTTCCTCTTTTGTAAGAGAGCAGTGGGGATATGTTAGAAA 5893 Query 2569 ATAATTTTT 2577 | |||||| Sbjct 5892 AATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8629317771720