Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_010294.1 Length=2604 Score E Sequences producing significant alignments: (Bits) Value seq9745 421 1e-114 >seq9745 Length=7305 Score = 421 bits (466), Expect = 1e-114 Identities = 687/981 (70%), Gaps = 20/981 (2%) Strand=Plus/Minus Query 1510 GTTTTTCTCCTCGCTGAGATACTCCTTATATGATGAATGGGGGCCAGGATTGCAGAGGAA 1569 ||| || || ||| ||| |||| ||||| ||| | ||| || |||||||| ||||| Sbjct 6816 GTTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAA 6757 Query 1570 GATAGCGGGAATTCCTCCTTTAATTTGAATTGGCTTTCCGTATTTGCAGTTTGATTGCCA 1629 ||| | ||| || || ||||||| || || |||||||||||| | | || | ||||| Sbjct 6756 GATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCA 6697 Query 1630 ATCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGATAATGCGGATTGACGTCATC 1689 ||| |||| ||||||||||||||| ||||| || |||| |||| |||||| |||| ||| Sbjct 6696 ATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATC 6637 Query 1690 GATTACGTTATACCACGCATCATTGGAGTAGATTTTTGGATTGAGATCGAGATGACCACA 1749 || ||||| ||||| ||||||||| ||| ||||||| | | ||| |||||| || Sbjct 6636 AATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCA 6577 Query 1750 TAGGTAATTGTGAGGACCGAGACTCCGGGCCCATTGTGTTTTGCCCGTTCTTGATTGTCC 1809 || ||||||||| || || | | |||||| |||||| || ||||| | | || Sbjct 6576 TAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACC 6517 Query 1810 CTCAATAACGATCGATATAGGTCTCAATGGCCGCGCAGCGGTA-TCACAAACGTTTTGAT 1868 || | ||| || ||||||| |||| | ||| || | |||||| |||||| | Sbjct 6516 TTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCACAA-CGTTTTCTT 6458 Query 1869 GAACCCATTGCGTAATTATTGGAGGAACATTATTGAACGATGATTGACT-AAATGGAGGG 1927 |||||| | || || || || || || || | | | || ||| |||| Sbjct 6457 CAACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATG-TACTGGATACAAAAGGAGAA 6399 Query 1928 ACCCATGGTTCCGGTGGTTTCTGAAAAATCCTTGTTGCGTTTGTGACTAGGTTGTGAAAT 1987 || || | | ||||| ||| || ||| | || | || | ||||| Sbjct 6398 ACATATATTGCAGGTGGAGCCTGGAATATCATATCCAAATTAGCATTTAATCTATGAAAA 6339 Query 1988 TGAAGGAAGAAATGTTGGGGTTGTTCTTCCTTTATGATCTGCAGAGCCTCTTCTGCAGAT 2047 | | | ||| || || ||| |||| | || |||| | || || | ||| Sbjct 6338 CGTAAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGAC 6279 Query 2048 GTTGCGTTTAATGCCTTTGCGTATGTGTCATTAGCAGATTGCTGACCTCCTCTAG----- 2102 | |||| || | |||||| |||||||| ||||| ||||| ||||| | Sbjct 6278 CCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTT 6219 Query 2103 -CTGATCTGCCGTCGATTTGGAACTCTCCCCATTCAGTTGTGTCTCCGTCCTTGTCGATG 2161 | ||||| || || || ||||| |||||||| ||| |||| ||||||| ||| ||||| Sbjct 6218 GCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATA 6159 Query 2162 TAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGTATGTTCGGATGGAAATGTGCTGAC 2221 || ||||| |||| ||||||||||||| ||||||||||||| ||||||||||||| |||| Sbjct 6158 TACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGAC 6099 Query 2222 CTGGTTGGGGATACCAGGTCGAAGAATCTGTTATTCGAGCACTGGTATTTTCCTTCGAAC 2281 |||||||| || || || ||||||||||||||||||| ||| ||| || |||||||| Sbjct 6098 CTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAAT 6039 Query 2282 TGTATGAGCACGTGTAGATGAGGTTGCCCATCTTGATGTGTTTCTCTACATATTTTGATG 2341 || || |||||||| ||| |||||| || | || ||| | |||||| || || |||||| Sbjct 6038 TGGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATG 5979 Query 2342 TATTTCTTGTTGACCGGAGTTGCAAGACGCTG--TAATTGTGATAACGCTTCTTCTTTAG 2399 ||||||||||| || || || || || |||||| || | ||||| ||||| | Sbjct 5978 TATTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAATTGAGAGA--GCTTCCTCTTTTG 5921 Query 2400 AAATGGAGCATTGCGGATATGTGAGGAAGTAGTTCTTGGCATTTATGCGAAAGCG---TC 2456 || ||||| || |||||||| || || || || | | |||||||| || | Sbjct 5920 TAAGAGAGCAGTGGGGATATGTTAGAAAAATATTTTTAGAAGAAATGCGAAAACGAGAAC 5861 Query 2457 TCGGTTGTGGCATTTTTGTAA 2477 ||| |||||| ||||||| Sbjct 5860 TCG---TTGGCATATTTGTAA 5843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8147445508200