Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_010307.1 Length=2725 Score E Sequences producing significant alignments: (Bits) Value seq9745 342 9e-91 >seq9745 Length=7305 Score = 342 bits (378), Expect = 9e-91 Identities = 647/951 (68%), Gaps = 41/951 (4%) Strand=Plus/Minus Query 1624 GtttttttCCTCGTCTAGATATTCTGTATATGACGAGGTAGGACCTGGGATTGCAGAGGA 1683 ||| || || ||||| ||| | ||| |||| ||| | || ||||| |||||| |||| Sbjct 6816 GTTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGG-ATTGCAAAGGA 6758 Query 1684 AGATTGTTGGAATGCCACCTTTAATTTGAATTGGCTTCCCGTA-CTTGGGTATTGCTTTG 1742 ||||||| || || || ||||||| || || ||||| ||||| ||| |||| || Sbjct 6757 AGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTC--TATTATACTG 6700 Query 1743 GCAGTCCCTTTGGGCCCCCATAAATTCTTTAAAGTGCTT-AGGTAGTGCGGGTCTACGTC 1801 || || |||| ||||||||| ||||| ||||| || || | || |||| || |||| Sbjct 6699 CCAATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTT 6640 Query 1802 ATCAATGACGTTGTACCAGGCATCGTTGCTGTATACTTTTGGACTGAGGTCTAAATGACC 1861 |||||||||||||||||||||||| ||| |||| |||||| || | || ||||||| Sbjct 6639 ATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACC 6580 Query 1862 ACATAGGTAGTTATGTGGACCTAGTGACCTGGCCCACATTGTTTTTCCAGTCCTGCTGTC 1921 |||| ||| || ||||| |||| ||| || ||||| |||||||| ||||| || || Sbjct 6579 GCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTC 6520 Query 1922 ACCTTCTATTACGATGCTAATGGGCCTCCATGGCCGCGCAGCGGCGTCCTTTATATTTTC 1981 |||||||| || || || || || | |||| | ||| ||| | | ||||| Sbjct 6519 ACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTC 6460 Query 1982 CGACACCCAGGATTTAAGTTCTTCTGGAACTTGATTAAAAGAAGAAGAAGAGAATGGACA 2041 |||||| || ||| || || || | |||| | | | | || | | Sbjct 6459 TTCAACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAA------ATGTACTGGATACAAA 6406 Query 2042 ATTAAAAACCTCCATAGGAGGTGCA------AAAATCCTATCTANNNNNNNNNNNNNNNN 2095 | | |||| | || | ||||| | || ||| |||| | Sbjct 6405 AGGAGAAACATATATTGCAGGTGGAGCCTGGAATATCATATCCAAATTAGCATTTAATCT 6346 Query 2096 ATGAAATTGTAAAACAAAATCTTTGGGAGCTTTCTCCCTTAGTATATTGAGGGCCGTAGC 2155 |||||| ||||| | ||||||| || ||| ||||| | ||| | | ||| | | Sbjct 6345 ATGAAAACGTAAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAGGCTGCTGT 6286 Query 2156 TTTTGACCCTGAATTGATTGCCTCGGCATATGCGTCGTTGGCAGATTGGCAGCCTCCTC- 2214 ||| ||||| ||||| | || || || || | || || || ||||| || |||| Sbjct 6285 TTTAGACCCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCT 6226 Query 2215 -----TAGCCGATCTTCCATCGATCTGGAAAGATCCATGATCAAGTACATCTCCGTCTTT 2269 | || ||||||||||| |||||||| ||| ||||| | |||||||| || Sbjct 6225 TGTAGTTGCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTT 6166 Query 2270 CTCCATGTAGGTTTTGACATCTGTTGAGCT---TTTAGCTCCCTGAATGTTCGGATGGAA 2326 ||| || || | || || | ||||| |||| ||||||| ||||| |||||||| Sbjct 6165 CTCGATATACGACTTCACGT---AGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAA 6109 Query 2327 ATGTGCTGACCTATTTGGGGATATGAGATCGAAGAATCTGTTGTTTTGGCATTTGAATTT 2386 ||||| |||||| |||| || | ||||||||||||||||| || |||| || | || Sbjct 6108 ATGTGTTGACCTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTT 6049 Query 2387 GCCTTCGAATTGGATGAGAACATGCAGGTGAGGAGTCCCATCTTCATGTAATTCTCTGCA 2446 |||||||||||||| || || || || |||| || | |||||| ||||||||| Sbjct 6048 CCCTTCGAATTGGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCA 5989 Query 2447 AATTCGAATGAATAATTTATTTGTTGGGGTTGATAATTTAGTTATTTG------GGAAAG 2500 ||| ||| || || ||| |||||| |||||| | |||| || || Sbjct 5988 AATCTTGATGTATTTCTTGTTTACTGGGGT-----ATTTAGGT-TTTGAATAATTGAGAG 5935 Query 2501 TGCTTCTTCTTTTGTGAGTGAGCAGTGAGGGTATGTTAGGAAATAATTTTT 2551 ||||| |||||||| || |||||||| || |||||||| ||| |||||| Sbjct 5934 AGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATATGTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8531041191660