Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_010313.1 Length=2803 Score E Sequences producing significant alignments: (Bits) Value seq9745 578 7e-162 >seq9745 Length=7305 Score = 578 bits (640), Expect = 7e-162 Identities = 711/973 (73%), Gaps = 8/973 (1%) Strand=Plus/Minus Query 1641 GAAGATCGCATTTTTTATTGCCCATGCTTTCAATGGTGCATTTTTCACTTCGTCTAGAAA 1700 ||||| |||||| | | ||||| | || | | ||| || || ||||||| ||||| Sbjct 6855 GAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAAA 6796 Query 1701 CTCTTTATATGATGATGTCGGGCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTT 1760 ||||||||| ||| | || ||||||||||| |||||||| ||||| || || ||||| Sbjct 6795 CTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTT 6736 Query 1761 AATTTGAATGGGCTTCCCGTATTTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAA 1820 || || || |||||| |||||| | | || ||||| || |||| |||||||||||| Sbjct 6735 AACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAA 6676 Query 1821 CTCTTTAAAGTGTTTGAGATAGTGGGGATCGACGTCATCAATGACGTTATACCAAGCATC 1880 || ||||| ||||| | ||| | ||||| |||| |||||||||||| ||||| ||||| Sbjct 6675 TTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATC 6616 Query 1881 ATTTGAATACACCTTTGGACTCAGGTCTAGATGGCCACACAAGTAATTGTGTGGACCTAA 1940 ||| ||| ||||| || | || ||| || || |||||||||||||| ||||| Sbjct 6615 ATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAA 6556 Query 1941 TGACCTGGCCCACATTGTCTTGCCTGTACGACTATCACCTTCAATAACTATATTAACCGG 2000 ||| || ||||| ||||| || || || | | |||||||| | ||||||| | | || Sbjct 6555 TGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGG 6496 Query 2001 TCTCCAAGGCCGCGCAGCGGCATCCATTACATTCTCGGAAACCCACTCTTCAAGTTCTTC 2060 || ||||| | ||| |||| || || || || |||||| |||| ||| || Sbjct 6495 TCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCTC 6436 Query 2061 CGGAACTTGATTAAAAGAAGAAGATAAAAAGGGAGAAACATAAGGAGCTGGAGGCTCCTG 2120 ||| || | ||||| | | |||| ||| ||||||||||| || || || |||| Sbjct 6435 CGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACATATATTGCAGGTGGAGCCTG 6376 Query 2121 AAAAATCCTATCTAAATTNnnnnnnnnNNNATGAAATTGCAAGACAAAATCTTTTGGAGC 2180 || ||| |||| ||||| |||||| | || | |||||||||| Sbjct 6375 GAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGGGCG 6316 Query 2181 TAACTCCTTTACAAT-TCTAAGAGCTTCTGCCTTACTTCCTGCGTTAAGCGCCTGGGCGT 2239 | ||| | | || |||||| ||| ||| ||| || | || || || | |||| Sbjct 6315 TTTTTCCCTAATTATCTCTAAG-GCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGT 6257 Query 2240 AAGCGTCATTGGCAGATTGTTGTCCTCCTCTTG------CCGATCTTCCGTCGATCTGAA 2293 || | ||||| || |||||||| || ||||||| | |||||||| || ||||| | Sbjct 6256 AAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGA 6197 Query 2294 ACTCTCCCCATTCAAGGGTGTCTCCGTCTTTATCGATATAGGACTTGACGTCGGAGCTGG 2353 | |||||||| |||| || ||||||| || |||||||| ||||| |||| |||||||| Sbjct 6196 ATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTGG 6137 Query 2354 ATTTAGCTCCCTGAATGTTTGGATGGAAATGTGCTGACCGGGTCGGGGATACCAAGTCGA 2413 ||||| ||||||| ||||||||||||||||||| ||||| ||| || || || | |||| Sbjct 6136 ATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCGA 6077 Query 2414 AGAATCTGTTATTTTGGCATTTGTATTTCCCCTCGAATTGAATGAGCGCATGCAGATGAG 2473 ||||||||||||| |||| |||| ||||| |||||||| || ||| | || ||| ||| Sbjct 6076 AGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACGAG 6017 Query 2474 GTTCCCCATTTTCATGCAGTTCTCTGCAGATTTTGATATATTTTTTGTTTGTGGGTGTTT 2533 |||||| |||||||| ||||||||| || ||||| ||||| |||||| || || | Sbjct 6016 GTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGTAT 5957 Query 2534 GGAGATTTTGAAGAAGGGAAAGTGCCTCTTCTTTAGTTAGAGAGCATTGTGGATAAGTTA 2593 || ||||||| || || || || || ||||| || |||||||| || ||||| |||| Sbjct 5956 TTAGGTTTTGAATAATTGAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATATGTTA 5897 Query 2594 GAAAATAATTTTT 2606 ||||| |||||| Sbjct 5896 GAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8772722463200