Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_010435.1 Length=2740 Score E Sequences producing significant alignments: (Bits) Value seq9745 452 7e-124 >seq9745 Length=7305 Score = 452 bits (500), Expect = 7e-124 Identities = 688/978 (70%), Gaps = 18/978 (2%) Strand=Plus/Minus Query 1590 GAAGATCGCATTCTTGAGAGCCCAATTCTTTAATGCGGTGTTCTTTTCTTCGTCGAGGAA 1649 ||||| ||||| |||||||||| ||| | || | |||||| |||||||| || || Sbjct 6855 GAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAAA 6796 Query 1650 TTCTTTATAACTGCTGTTGGGACCAGGATTGCAGAGGAAGATTGTCGGTATCCCGCCTTT 1709 ||||||||||| |||||| || |||||||| ||||||||||| || ||||||||||| Sbjct 6795 CTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTT 6736 Query 1710 AATTTGAACTGGTTTCCCGTATTTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATAAA 1769 || || || || || |||||| || | || | ||||| || |||| ||||||||| || Sbjct 6735 AACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAA 6676 Query 1770 CTCTTTAAAGTGCTTGAGGAAATGCGGATCGACGTCATCAATGACGTTAAACCACGCGTC 1829 || ||||| || || | || ||||||| |||| |||||||||||| |||| || || Sbjct 6675 TTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATC 6616 Query 1830 GTTGCTGTACACTTTTGGGCTTAGATCTAAATGCCCACATAGATAGTTATGTGGGCCTAA 1889 ||| ||||| ||||||||||| ||| |||| || |||| || || ||||||||||| Sbjct 6615 ATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAA 6556 Query 1890 TGATCTAGCCCATATCGTCTTCCCAGTACGACTATCTCCCTCTATGACTATACTTTGAGG 1949 ||||||||||||||| || |||||||| | | || || |||| |||||||| ||| Sbjct 6555 TGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGG 6496 Query 1950 TCTCAGGGGCCGCGCAGCGGCATCGACGACATTCTCGCAGGCCCACTCTTCAAGTTCTTC 2009 || | |||| | ||| |||| || || || || |||| |||| ||| || Sbjct 6495 TCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCTC 6436 Query 2010 TGGAACTTGATCAAATGAAGANNNNNNNNNNNGAGAAACATAAGGAGCTGGTGGATCCTG 2069 || || | | ||||| | |||||||||| || |||||| |||| Sbjct 6435 CGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACATATATTGCAGGTGGAGCCTG 6376 Query 2070 AAAATACCTATCTAAATTTGAATTTAAATTATGAAATTG-AAGTAGAAAGTCTCTTGGGG 2128 || | |||| ||||| | |||||| ||||||| | || || | | ||| ||||| Sbjct 6375 GAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATA-ATAATCTTTTGGGC 6317 Query 2129 CTTTCTCCTTTAGTATATTGAGGGCCTGAGCTTTGGACCCTGCGTTGATTGCCTCGGCAT 2188 ||| ||| | | ||| | | ||| | ||| ||||| | || | || || || | Sbjct 6316 GTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGT 6257 Query 2189 ATGCGTCGTTGGCAGATTGGCAACCTCCTC------TAGCTGATCTTCCATCGACCTGGA 2242 | | || || || ||||| ||| |||| | || ||||||||||| | ||||| Sbjct 6256 AAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGA 6197 Query 2243 AAACTCCATGATCAAGGATGTCTCCGTCTTTCTCCATGTAGGTTTTGACATCGCTTGAGC 2302 | |||| ||||| | ||||||| ||||| || || | || || | | |||| Sbjct 6196 ATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAG---GAGC 6140 Query 2303 T---TTTAGCTCCCTGAATGTTTGGATGGAAATGTGCTGACCTGCTTGGAGATGTGAGGT 2359 | |||| ||||||| ||||||||||||||||||| ||||||| ||||||| || | Sbjct 6139 TGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGAT 6080 Query 2360 CGAAGAATCTATTGTTTCTGCACTGGAACTTCCCTTCGAACTGAATGAGAACATGCAAGT 2419 |||||||||| || || |||| | ||||||||||||| || || || || || | Sbjct 6079 CGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGAC 6020 Query 2420 GAGGAGTCCCATCTTCATGAAGCTCTCTGCAGATTCTAATGAAtttttttGAAGTTGGGG 2479 |||| || | ||||||| |||||||| || | ||| |||| || ||||| Sbjct 6019 GAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGG 5960 Query 2480 TTTGGAGATTT--AAGAATTGGGAAAGTGCCTCTTCTTTAGTGAGTGAGCATTTGGGATA 2537 | | || ||| || |||| || || || || ||||| || || ||||| | |||||| Sbjct 5959 TATTTAGGTTTTGAATAATT--GAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATA 5902 Query 2538 AGTGAGGAAATAATTTTT 2555 || || ||| |||||| Sbjct 5901 TGTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8578594375560