Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_010439.1 Length=2723 Score E Sequences producing significant alignments: (Bits) Value seq9745 545 4e-152 >seq9745 Length=7305 Score = 545 bits (604), Expect = 4e-152 Identities = 678/920 (74%), Gaps = 20/920 (2%) Strand=Plus/Minus Query 1639 ACTCTTTATACGATGATGTAGGACCAGGATTGCAGAGGAAGATAGTGGGTATTCCACCTT 1698 |||||||||| ||| | || || |||||||| |||||||| ||||| || || |||| Sbjct 6796 ACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTT 6737 Query 1699 TAATTTGAATTGGTTTCCCGTA-CTTCGTGTTGCTTTGCCAGTCTCTTTGGGCCCCCATG 1757 ||| || || || || ||||| |||| | || ||||| || |||| |||||||||| Sbjct 6736 TAACTTAAAAGGGCTTTCCGTATCTTC-TATTATACTGCCAATCACTTTTGGCCCCCATG 6678 Query 1758 AACTCTTTAAAATGCTTTAGATAATGCGGATCAACGTCATCAATGACGTTATACCAAGCA 1817 || || |||||||| |||| |||| |||||||||||| |||||||||||| ||||| ||| Sbjct 6677 AATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCA 6618 Query 1818 TCATTGCTGTAAACCTTTGGGCTTAGGTCCAAATGTCCGCATAGATAATTGTGTTGGCCC 1877 |||||| |||| |||||||||| || |||| ||||||| ||||||||| |||| Sbjct 6617 TCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCT 6558 Query 1878 AGAGATCTAGCCCACATCGTCTTTCCTGTTCTACTATTGCCTTCTATTACAATACTTATG 1937 | ||||||||||| || || || || |||||| | ||||||| || ||||| || Sbjct 6557 AATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATA 6498 Query 1938 GGCCTCCAAGGCCGCGCAGCGGCATCCCTGACATTCTCGGAAACCCATTCTTCAAGTTCT 1997 || | ||||| | ||| |||| | || || || |||||| |||| ||| Sbjct 6497 GGTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATC 6438 Query 1998 TTTGGAACTTGATCGAAAGAAGAAGGAAGAAAAGGACAAACAAAAACCTCTAAAGGAGGT 2057 | || || | | || | | | | ||||||| ||||| | | | ||| || Sbjct 6437 TCCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACATATATTGC---AGGTGGA 6381 Query 2058 GCA---AAAATTCTATCTAAATTCGCATTTAAATTGTGAAATTGTAAAATATAATCTTTA 2114 || || || |||| ||||| |||||||| | ||||| ||||| ||||||||| Sbjct 6380 GCCTGGAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTT 6321 Query 2115 GGGGCTAATTCTCTAATTACAT-TAAGAGCCTCCGACTTACTTCCTGTGTTAATTGCTTT 2173 ||| | ||| ||||||| | |||| || | | ||| || | || | |||| Sbjct 6320 GGGCGTTTTTCCCTAATTATCTCTAAG-GCTGCTGTTTTAGACCCAGAATTTAGGGCTTC 6262 Query 2174 GGCGTAAGCATCATTGGCTGTTTGTTGACCCCCTCTAG------CAGATCTTCCGTCGAC 2227 |||||| ||||||| || | ||||||||||||||| | |||||||||| || | Sbjct 6261 TGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCAT 6202 Query 2228 CTGAAACTCACCCCATTCGACGGTGTCTCCGTCTTTATCAATATAGGATTTGACGTCGGA 2287 ||| || || ||||| || | || ||||||| || || ||||| || || |||| ||| Sbjct 6201 CTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGA 6142 Query 2288 GCTTGATTTAGCTCCCTGAATGTTTGGATGGAAATGTGCTGATCTGGTTGGGGATACCAA 2347 ||| |||||| ||||||| ||||||||||||||||||| ||| |||||||| || || | Sbjct 6141 GCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAG 6082 Query 2348 ATCGAAGAATCGTTGATTCGTGCATCTGTATTTCCCCTCGAACTGGATGAGCACATGGAG 2407 ||||||||||| | |||||||||| |||| ||||| ||||| ||||| ||||| ||||| Sbjct 6081 ATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAG 6022 Query 2408 ATGAGGGCTCCCATCTTCGTGCAGTTCTCTGCAGATCTTGATGAATTTTTTATTTGTTGG 2467 | |||| || | ||| || ||||||||| ||||||||| |||| || ||| ||| Sbjct 6021 ACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGG 5962 Query 2468 TGTTTCTAGGTTTTG--TAATTGGGTAAGGGTTTCCTCTTTAGTAAGAGAGCATTTGGGA 2525 || | ||||||||| |||||| | || | ||||||||| ||||||||||| | |||| Sbjct 5961 GGTATTTAGGTTTTGAATAATTGAG--AGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGA 5904 Query 2526 TATGTAAGAAAATAATTTTT 2545 ||||| |||||| |||||| Sbjct 5903 TATGTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8524700767140