Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_010440.1 Length=2761 Score E Sequences producing significant alignments: (Bits) Value seq9745 553 3e-154 >seq9745 Length=7305 Score = 553 bits (612), Expect = 3e-154 Identities = 694/948 (73%), Gaps = 15/948 (2%) Strand=Plus/Minus Query 1631 TTAAT-GCTGAATTTTTATTTTCGTCCAAGTACTCTTTATATGATGATGTTGGTCCCGGA 1689 ||||| |||| || |||| |||||| | |||||||||| ||| | ||||| ||| Sbjct 6827 TTAATAGCTGCGTTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGA 6768 Query 1690 TTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAATGGGCTTCCCGTACTTGGTG 1749 ||||| |||||||| ||||| || || ||||||| || || |||||| ||||| | | Sbjct 6767 TTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTA 6708 Query 1750 TTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAATGCTTTAGATAGTGGGGG 1809 || ||||| || |||| ||||||||||||||| |||||||| |||| ||| | || Sbjct 6707 TTATACTGCCAATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGA 6648 Query 1810 TSGACGTCATCAATGACGTTGTACCAAGCATCATTACTGTAGACCTTTGGACTTAAGTCC 1869 | |||| |||||||||||||||||| |||||||| |||| ||||| |||| || Sbjct 6647 TCAACGTTATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCA 6588 Query 1870 AGATGTCCACATAAGTAATTGTGTGGACCCAGTGACCTAGCCCACATCGTCTTCCCTGTC 1929 ||| || ||||||||||||||||| || | ||| |||||||| || || ||||| || Sbjct 6587 TAATGACCGCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTT 6528 Query 1930 CTACTATCGCCCTCTATTACAATACTTTTAGGTCTCCAAGGCCGCGCAGCGGCATCCCTT 1989 ||| || || |||| || ||||| |||||| ||||| | ||| |||| | Sbjct 6527 CTAGCCTCACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCACA 6468 Query 1990 ACATTCTCAGAGACCCAATCTTCAAGTTCTTCTGGAACTTGATTaaaagaagaagaaaga 2049 || || || ||||| |||| ||| || || || | ||||| | | || | | Sbjct 6467 ACGTTTTCTTCAACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACTGGATACA 6408 Query 2050 aaaggacaaacaaaaacctctaaaggaggtgc---gaaaaTCCTATCTAAATTATTATTT 2106 |||||| ||||| | | | ||| || || ||| ||| |||| |||||| |||| Sbjct 6407 AAAGGAGAAACATATATTGC---AGGTGGAGCCTGGAATATCATATCCAAATTAGCATTT 6351 Query 2107 AAATTATGAAATTGTAAAACAAAATCTTTAGGAGCTAATTCCTTAATTACAT-TAAGAGC 2165 || ||||||| ||||| | ||||||| || | |||| |||||| | |||| || Sbjct 6350 AATCTATGAAAACGTAAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAG-GC 6292 Query 2166 CTCCGACTTACTTCCTGCGTTAAGCGCCTTGGCGTAAGCATCATTGGCTGATTGTTGTCC 2225 | | ||| || | || || || | |||||| ||||||| || |||||||| || Sbjct 6291 TGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACC 6232 Query 2226 CCCTCGTG------CAGATCGTGCGTCGATCTGGAATTCACCCCATTCGAGAGTGTCTCC 2279 ||||| || |||||| | | || ||||||||||| ||||| || | || ||||| Sbjct 6231 CCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCC 6172 Query 2280 GTCCTTGTCGATATAGGACTTGACGTCGGAGCTTGATTTAGCTCCCTGAATGTTCGGATG 2339 || ||| |||||||| ||||| |||| |||||| |||||| ||||||| ||||| ||||| Sbjct 6171 GTGCTTCTCGATATACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATG 6112 Query 2340 GAAATGTGCTGACCTGGAAGGGGATACAAGGTCGAAGAATCGTGAATTTGTGCATCTGTA 2399 |||||||| |||||||| || || ||||| |||||||||| ||| |||||| |||| Sbjct 6111 GAAATGTGTTGACCTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTA 6052 Query 2400 TTTCCCTTCGAACTGTACGAGCACGTGGAGATGAGGGCTCCCATCTTCGTGAAGTTCTCT 2459 ||||||||||| || | |||||||||||| |||| || | ||| ||| |||||| Sbjct 6051 CTTCCCTTCGAATTGGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCT 5992 Query 2460 GCAGATTCTGATATATTTTTTATTTGTTGGGGTTTGTATATTTTGTATTTGGGAAAGTGC 2519 ||| || |||| ||||| || ||| |||||| | || ||||| || || || || Sbjct 5991 GCAAATCTTGATGTATTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAATTGAGAGAGC 5932 Query 2520 TTCCTCTTTGGTTAGAGAGCACTGTGGATATGTGAGGAAATAATTTTT 2567 ||||||||| || |||||||| || |||||||| || ||| |||||| Sbjct 5931 TTCCTCTTTTGTAAGAGAGCAGTGGGGATATGTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.913 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8645168833020