Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_010441.2 Length=2750 Score E Sequences producing significant alignments: (Bits) Value seq9745 524 1e-145 >seq9745 Length=7305 Score = 524 bits (580), Expect = 1e-145 Identities = 715/991 (72%), Gaps = 24/991 (2%) Strand=Plus/Minus Query 1609 CTGCATTCTTTAGTGCCCAGTCTTTGAGTGCAGAATTTTTATCCTCATCTAGGTACTCTT 1668 ||||||| | || |||||| || | || | || ||||| || || || |||||| Sbjct 6850 CTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAAACTCTT 6791 Query 1669 TATACGACGACGTTGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTT 1728 |||| || | |||||||||||||| |||||||| ||||| || || ||||||| || Sbjct 6790 TATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTT 6731 Query 1729 GAATGGGCTTCCCGTATTTCGTGTTGCTTTGCCAGTCCCTCTGGGCCCCCATGAATTCTT 1788 || |||||| |||||| | | || ||||| || || | ||||||||||||||| | Sbjct 6730 AAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAATTCCT 6671 Query 1789 TAAAGTGCTTTAGATAGTGGGGGTCGACGTCATCGATGACGTTGTACCAAACATTATTAC 1848 |||| || |||| ||| | || || |||| ||| |||||||||||||| ||| ||| Sbjct 6670 TAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATCATTGT 6611 Query 1849 TGTAGACCTTTGGACTTAAGTCCAGATGTCCACATAAATAATTGTGTGGACCCAGTGACC 1908 |||| ||||| |||| || ||| || ||||| ||||||||||| || | ||| | Sbjct 6610 TGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAATGATC 6551 Query 1909 TAGCCCACATCGTCTTCCCTGTCCTACTATCACCCTCTACCACTATACTTTTAGGTCTCC 1968 ||||||| || || ||||| || ||| ||||| ||||| |||||||| |||||| Sbjct 6550 TAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGGTCGGT 6491 Query 1969 ACGGCCGCGCAGCGGCATCCCTCACA---TTCTCGGAGACCCATACTTCAAGTTCCTCTG 2025 |||| | ||| |||| |||||| || || ||||| ||| ||| ||| | Sbjct 6490 GAGGCCTCCCAGAGGCA---CTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCTCCG 6434 Query 2026 GAACTTGATCgaaagaagaagaaagaaaaggagaaacaaaaacctctaaaggaggtgca- 2084 | || | | || | | || | ||||||||||||| | | | ||| || || Sbjct 6433 GTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACATATATTGC---AGGTGGAGCCT 6377 Query 2085 --aaaaTCCTATCTAAATTAGAATTTAAATTATGAAATTGTAAAACAAAATCTTTAGGAG 2142 || ||| |||| ||||||| |||||| ||||||| ||||| | ||||||| || Sbjct 6376 GGAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGGGC 6317 Query 2143 CTAACTCTTTAATTACAT-TAAGAGCCTCTGACTTACTGCCGCTGTTAAGTGCCTTGGCG 2201 | || |||||| | |||| || ||| ||| || || || || | ||| Sbjct 6316 GTTTTTCCCTAATTATCTCTAAG-GCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCG 6258 Query 2202 TAAGCGTCATTGGCTGATTGTTGACCCCCTCGTCCACTT------CTTCCGTCGATCTGG 2255 ||| | ||||| || |||||||||||||||| | | || ||||| || |||||| Sbjct 6257 TAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGG 6198 Query 2256 AATTCGCCCCATTCGAGTGTGTCTCCGTCCTTGTCGATATAGGACTTGACGTCGGAGCTC 2315 ||||| ||||| || | ||| ||||||| ||| |||||||| ||||| |||| |||||| Sbjct 6197 AATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTG 6138 Query 2316 GATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGTTTGGGGATACCAAATCG 2375 |||||| ||||||| ||||| ||||||||||||| ||||||| |||| || || | |||| Sbjct 6137 GATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCG 6078 Query 2376 AAGAATCTGTTATTTTGGCACTTGTATTTGCCTTCGAACTGGACCAGCACGTGGAGATGA 2435 |||||||||||||| ||| |||| || |||||||| |||| |||||||||||| || Sbjct 6077 AAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACGA 6018 Query 2436 GGGCTCCCATCTTCGTGTAACTCTCGACAGATCTTTATGTATTTTTTATTTGTTGGTGTG 2495 || || | ||| || |||| || ||||| |||||||| || ||| ||| || Sbjct 6017 GGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGTA 5958 Query 2496 TTTAGGGTTTG--CAATTGGGAAAGTGCTTCTTCTTTAGTGAGAGAGCATTGTGGATAAG 2553 |||||| |||| |||| || || ||||| ||||| || |||||||| || ||||| | Sbjct 5957 TTTAGGTTTTGAATAATT--GAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATATG 5900 Query 2554 TGAGGAAATAATTTTTAGCATTAATAAGAAA 2584 | || ||| |||||||| | ||| |||| Sbjct 5899 TTAGAAAAATATTTTTAGAAGAAATGCGAAA 5869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8610296498160