Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_010618.1 Length=2747 Score E Sequences producing significant alignments: (Bits) Value seq9745 569 3e-159 >seq9745 Length=7305 Score = 569 bits (630), Expect = 3e-159 Identities = 721/987 (73%), Gaps = 12/987 (1%) Strand=Plus/Minus Query 1604 TGCATTTTTTAAAGCCCAATCTTTGAGTGCGGAATTCTTTTCCTCTTCTAGATACTCTTT 1663 ||||||| | | |||||| || | || | ||||| || || || ||| ||||||| Sbjct 6849 TGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAAACTCTTT 6790 Query 1664 ATAGCTGGAATTGGGTCCTGGATTGCAAAGGAAGATAGTTGGAATTCCACCTTTAATTTG 1723 ||| || || |||||||||||||||||||||||||| || || || || ||||||| || Sbjct 6789 ATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTTA 6730 Query 1724 AATTGGCTTCCCGTACTTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCCTT 1783 || ||||| ||||| || | || ||||| || |||| |||||||||||||||||| Sbjct 6729 AAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAATTCCTT 6670 Query 1784 AAAGTGCTTTAGGTAGTGGGGATCGACGTCATCAATGACGTTATACCATGCATCATTCCT 1843 ||| || |||| || | ||||| |||| |||||||||||| ||||| |||||||| | Sbjct 6669 AAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATCATTGTT 6610 Query 1844 GTATACCTTTGGACTGAGATCCAAATGTCCGCACAGATAATTATGTAGTCCTAATGACCT 1903 ||| ||||| || | ||| |||| ||||| | ||||| ||| | |||||||| || Sbjct 6609 GTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAATGATCT 6550 Query 1904 GGCCCACATAGTCTTCCCCGTTCTACTATCACCCTCTATGACTATACTTATCGGTCTTAA 1963 ||||| || || ||||| |||||| ||||| |||| |||||||| || |||| Sbjct 6549 AGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGGTCGGTG 6490 Query 1964 AGGCCGCGCAGCGGCATCCCTTACATTATCGGAAACCCATTCTTCAAGTTCTTCTGGAAC 2023 ||||| | ||| |||| | || || || |||||| |||| ||| || || || Sbjct 6489 AGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCTCCGGTAC 6430 Query 2024 TTGATCAAACGATGAAGATAAAAAAGGACAACTAAAAATCTCTAATGGAGGTGCAAAAAT 2083 | | ||| | |||| ||||||| || | | || | ||||| || || Sbjct 6429 GTTGTTAAATGTACTGGATACAAAAGGAGAAACATATATTGCAGGTGGAGCCTGGAATAT 6370 Query 2084 CCTATCTAAATTGGAATTTAAATTATGAAATTGTAATACATAATCCTTGGGGGCTAATTC 2143 | |||| ||||| | |||||| ||||||| |||| |||||| || ||| | ||| Sbjct 6369 CATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGGGCGTTTTTC 6310 Query 2144 TTTAATTACAT-TAAGAGCCTCTGACTTACTGCTGCTGTTAAGCGCCTTGGCGTAAGCGT 2202 |||||| | |||| || ||| ||| | || || || | |||||| | | Sbjct 6309 CCTAATTATCTCTAAG-GCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGTAAACAT 6251 Query 2203 CGTTGGCTGATTGCTGTCCCCCTCTTG------CAGATCTTGCATCGATTTGAAACTCTC 2256 | || || ||||| || |||||||||| |||||||| |||| || || || |||| Sbjct 6250 CATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAATTCTC 6191 Query 2257 CCCAATCGATGATGTCTCCGTCTTTCTTGATATAGGACTTGACGTCGGAGCTGGATTTAG 2316 ||||||| || | ||||||| |||| |||||| ||||| |||| ||||||||||||| Sbjct 6190 CCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTGGATTTAC 6131 Query 2317 CTCCCTGAATGTTTGGATGGAAATGTGCTGACCTGGTTGGGGATACCAGGTCGAAGAATC 2376 ||||||| ||||||||||||||||||| |||||||||||| || || || |||||||||| Sbjct 6130 CTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCGAAGAATC 6071 Query 2377 TGTTATTCTGGCATTTGTATTTTCCTTCGAATTGGATAAGCACGTGGAGATGAGGAGACC 2436 |||||||| |||| |||| || ||||||||||||||||||||||||||| |||| || Sbjct 6070 TGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACGAGGTTCCC 6011 Query 2437 CATCGTCGTGAAGCTCTCTGCAGATTCTGATATATTTCTTGTTAGTTGGGGTGACTAGGT 2496 | || ||| |||||||| || |||| ||||||||||| |||||| ||||| Sbjct 6010 TGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGTATTTAGGT 5951 Query 2497 TTTG--TAATTGGGAAAGTGCGTCTTCTTTGGAGAGAGAACACTTGGGATAAGTGATGAA 2554 |||| ||||| || || || || ||||| | ||||| || | |||||| || | || Sbjct 5950 TTTGAATAATT--GAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATATGTTAGAAA 5893 Query 2555 ATAGTTTTTAGCATATATTTGGAAACG 2581 | ||||||| | | || | ||||| Sbjct 5892 AATATTTTTAGAAGAAATGCGAAAACG 5866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8600785861380