Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_010647.1 Length=2630 Score E Sequences producing significant alignments: (Bits) Value seq9745 223 6e-55 >seq9745 Length=7305 Score = 223 bits (246), Expect = 6e-55 Identities = 248/328 (76%), Gaps = 5/328 (2%) Strand=Plus/Minus Query 2130 CCGTCGACCTGGAATTCTCCCCATTCGACTGTGACTCCATCCTTGTCGAGATAGGACTTG 2189 || || | ||||||||||||||| || | ||| |||| | ||| |||| ||| ||||| Sbjct 6209 CCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTC 6150 Query 2190 ACGTCGGAGCTCGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCGGGATGGG 2249 |||| |||||| |||||| ||||||| ||||| ||||||||||||| ||||| || ||| Sbjct 6149 ACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGA 6090 Query 2250 GAGACCAGGTCGAATAATCTGTTATTCGTGCGGACGAATTTTCCTTCGAACTGGATAAGC 2309 ||||| || ||||| |||||||||||||||| | | || |||||||| ||||||||| Sbjct 6089 GAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGC 6030 Query 2310 ACATGGAGATGAGGCTGCCCATCCTCGTGTAATTCCTCACATATCTTGATGAACTTCTTG 2369 || |||||| |||| | || | || || ||| || ||||||||| | |||||| Sbjct 6029 ACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTG 5970 Query 2370 TTGGTGGCAGTGAAAATATTTTG--TAATTGGGAAAGAGCCTCTTCTTTTGAAAGAGAAC 2427 || | || | ||||| ||||| || ||||| || ||||||| |||||| | Sbjct 5969 TTTACTGGGGTATTTAGGTTTTGAATAATT--GAGAGAGCTTCCTCTTTTGTAAGAGAGC 5912 Query 2428 ACTGAGGATATGTGAG-GAAATAGtttt 2454 | || |||||||| || ||||| |||| Sbjct 5911 AGTGGGGATATGTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8229871026960