Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_010713.1 Length=2767 Score E Sequences producing significant alignments: (Bits) Value seq9745 462 4e-127 >seq9745 Length=7305 Score = 462 bits (512), Expect = 4e-127 Identities = 691/977 (71%), Gaps = 14/977 (1%) Strand=Plus/Minus Query 1595 CGAACTCTGCATTTTTCAAAGCCCAAGTCTTTAGTGCGGATTGCTTTTCTTCATTTAAAA 1654 |||| |||||||| | | |||||| | ||| | || | | ||| ||||| | | || Sbjct 6856 CGAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAA 6797 Query 1655 ATTGAATATAGCTGGCACCGGGCCCTGGATTGCAGAGAAAGATAGTGGGAATCCCACCTT 1714 | | |||| || | ||| ||||||||||| || ||||| ||||| ||||| |||| Sbjct 6796 ACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTT 6737 Query 1715 TAATTTGAACTGGCTTTCCGTATTTTGTATTGCTTTGCCAGTCTCTTTGGGCCCCCATGA 1774 ||| || || |||||||||||| || |||| ||||| || |||| ||||||||||| Sbjct 6736 TAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGA 6677 Query 1775 ATTCCTTAAAGTGCTTTAAATAGTGGGGGTCGACATCATCAATGACGTTATACCATGCGT 1834 |||||||||| || |||||||| | || || || | |||||||||||| ||||| || | Sbjct 6676 ATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCAT 6617 Query 1835 CATTACTGTAAACCTTGGGACTCAAGTCTAGGTGACCACATAAATAATTATGTGGTCCAA 1894 |||| |||| || || || | || ||||| ||||| ||||| ||||| || | Sbjct 6616 CATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTA 6557 Query 1895 GTGATCTGGCCCACATTGTTTTCCCTGTTCGACTATCGCCCTCAAGAACAATTGATTTAG 1954 |||||| ||||| ||||||||||| |||| | || || || | ||| || ||| Sbjct 6556 ATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAG 6497 Query 1955 GTCTTAATGGCCGCGCAGCGGCACTCATCACATTTTCTGAAACCCAGAGTTCAAGTTCTT 2014 ||| |||| | ||| |||||||| || |||||| ||||||| || ||| | Sbjct 6496 GTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCT 6437 Query 2015 CTGGAACTTGATTAAAAGAAGATGAAAGAAATGGGGACCTATAAAT---AGGCACCTCTT 2071 | || || | ||||| | | || | ||| || || ||| || ||| | | Sbjct 6436 CCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACATATATTGCAGGTGGAGCCT 6377 Query 2072 GTACAAATATCCTATCTAAATTTGAATTTAAATTGTGAAATTGTAAAATAAAATCCTTAG 2131 | | ||||| |||| ||||| | |||||| | ||||| ||||| | |||| || | Sbjct 6376 GGA---ATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTG 6320 Query 2132 GGGCTAATTCTTTAATGACCT-TAAGAGCTTCGTGCTTACTGCCAGTGTTAAGCGCCTGG 2190 || | ||| |||| | || |||| ||| | ||| |||| || || || | Sbjct 6319 GGCGTTTTTCCCTAATTATCTCTAAG-GCTGCTGTTTTAGACCCAGAATTTAGGGCTTCT 6261 Query 2191 GCGTAAGCATCATTAGCTGTCTGTGGACCTCCTCGTG------CAGATCTCCCGTCGATC 2244 |||||| |||||||||| | ||| |||| |||| || ||||||| || || ||| Sbjct 6260 GCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATC 6201 Query 2245 TGGAATTCTCCCCATTCCAGTGTGTCCCCGTCCTTATCCATATAGGACTTGACGTCGGAA 2304 |||||||||||||| || | ||| || |||| ||| || ||||| ||||| |||| ||| Sbjct 6200 TGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAG 6141 Query 2305 CTCGATTTTGCCCCTTGAATGTTAGGATGGAAGTGGGCTGATCTTGTTGGGGATACCAGA 2364 || ||||| | || || ||||| |||||||| || | ||| || ||||| || || ||| Sbjct 6140 CTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGA 6081 Query 2365 TCGAAGAATCGTTGATTCTTGCATTGGAATTTGCCCTCGAATTGCATAAGAACGTGGAGA 2424 |||||||||| | |||| ||||| | | || || |||||||| ||||| ||||||||| Sbjct 6080 TCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGA 6021 Query 2425 TGAGGGCTCCCATCTTCGTGGAGTTCTCTGCAAATCTTGATGAATTTTTTATTGGTTGGT 2484 |||| || | ||| || ||||||||||||||||||| |||| || || ||| Sbjct 6020 CGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGG 5961 Query 2485 GTAACAATTGCCAGAAGTCTGGCAAGAGTTTCTTCTTTTGTGAGTGAGCATTGTGGATAA 2544 ||| | ||| | | |||| ||| |||||||| || ||||| || ||||| Sbjct 5960 GTATTTAGGTTTTGAATAATTGAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATAT 5901 Query 2545 GTGAGAAAATAATTTTT 2561 || |||||| |||||| Sbjct 5900 GTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8664190106580