Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_010791.1 Length=2738 Score E Sequences producing significant alignments: (Bits) Value seq9745 466 3e-128 >seq9745 Length=7305 Score = 466 bits (516), Expect = 3e-128 Identities = 684/952 (72%), Gaps = 28/952 (3%) Strand=Plus/Minus Query 1634 AGCTGCATTCCGCTCCTCGTCTAAGTATTCTTTATAGGACGAAGTTGGG-CCTGGATTGC 1692 |||||| ||| || ||||| | | |||||||| || |||||| |||||||||| Sbjct 6822 AGCTGCGTTCTTATCTTCGTCAAGAAACTCTTTATAACTTGA-GTTGGGTCCTGGATTGC 6764 Query 1693 AGAGGAAGATAGTGGGAATACCACCTTTAATTTGAATTGGTTTCCCGTATTTGGTGTTGC 1752 | |||||||| ||||| || || ||||||| || || || || |||||| | | || Sbjct 6763 AAAGGAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTAT 6704 Query 1753 TTTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGCTTTAAGTAGTGGGGGTCTA 1812 ||||| || |||| |||||||||||| || ||||| || ||||| || | || || | Sbjct 6703 ACTGCCAATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGATCAA 6644 Query 1813 CATCATCAATCACGTTGTACCAGGCATCATTATTGTACACTCTTGGACTGAGGTCTAAGT 1872 | | |||||| |||||||||||||||||||| |||||| | |||| || | || | | Sbjct 6643 CGTTATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAAT 6584 Query 1873 GACCACATAGATAATTATGTGGCCCCAACGACCTGGCCCACATTGTTTTGCCAGTACGAC 1932 |||| |||| ||||| ||||| || || || || ||||| |||||||| ||||| | | Sbjct 6583 GACCGCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAG 6524 Query 1933 TCTCGCCCTCGATTACAATGCTAATGGGTCTCCACGGCCGCGCAGCGGCATCTTTGATGT 1992 ||| || || | || || || || |||| |||| | ||| |||| | || Sbjct 6523 CCTCACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCACAACGT 6464 Query 1993 TATCTGCAACCCAGCACTCAATCTCCTCTGGGAC-TTGATCAAAGGACGATGATAAGAAT 2051 | ||| |||||||| | || ||| || || ||| | || | || |||| || Sbjct 6463 TTTCTTCAACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACTG-GATACAAAA 6405 Query 2052 GGACAATTAAATACCTCTACTGGGGGTGCA---AATATTTTATCTAAATTGGCATTTAAA 2108 ||| || | ||| | | || || || ||||| |||| ||||| |||||||| Sbjct 6404 GGAGAAACATATAT---TGCAGGTGGAGCCTGGAATATCATATCCAAATTAGCATTTAAT 6348 Query 2109 TTATGAAACTGTAAAACATAATCTTTAGGAGCGAGCT-CCTTAATTACAT-TAAGAGCCA 2166 ||||||| ||||| ||||||||| || ||| | || |||||| | |||| || Sbjct 6347 CTATGAAAACGTAAATAATAATCTTTTGG-GCGTTTTTCCCTAATTATCTCTAAG-GCTG 6290 Query 2167 GTAATTTGCTACCAGTGTTAATCGCCTGCGCGTAAGCGTCATTGGCTGATTGCTGACCCC 2226 | ||| |||| || | || | |||||| | ||||| || ||||| ||||||| Sbjct 6289 CTGTTTTAGACCCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCC 6230 Query 2227 CTCTTG------CAGATCTGCCGTCTACCTGAAACTCTCCCCATTCGGCGGTGTCGCCGT 2280 |||||| ||||||| || || | ||| || |||||||| || || || |||| Sbjct 6229 CTCTTGTAGTTGCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGT 6170 Query 2281 CTTTTTCCATGTATTTTTTGACATCGGAGCTGGACTTAGCTCCCTGAATGTTTGGATGGA 2340 || || || || || || | ||||||||| ||| ||||||| ||||||||||||| Sbjct 6169 GCTTCTCGATATACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGA 6110 Query 2341 AATGTGTTGACCTGGTTGGGGATACCAGGTCGAAGAATCTGTTATTCTGGCATTTGTATT 2400 ||||||||||||||||||| || || || |||||||||||||||||| |||| |||| | Sbjct 6109 AATGTGTTGACCTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACT 6050 Query 2401 TTCCCTCGAATTGAATAAGAACATGGAGGTGAGGGCTTCCATCTT--CATGAAGCTCTCT 2458 | || |||||||| ||||| || ||||| |||| |||| | || ||||| ||||| Sbjct 6049 TCCCTTCGAATTGGATAAGCACGTGGAGACGAGG--TTCCCTGTTTTCATGAGCTTCTCT 5992 Query 2459 GCAAATTTTAATAAATTTTTTATTTGTTGGGGTTGAGAGGTTT--AATAATTGGGAAAGT 2516 |||||| || || |||| || ||| |||||| |||||| |||||||| || || Sbjct 5991 GCAAATCTTGATGTATTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAATTGAGAGAG- 5933 Query 2517 GCTTCCTCTTTGGAGAGAGGGCACTGAGGATATGTGAGAAAATAATTTTTAG 2568 |||||||||| | |||| ||| || |||||||| |||||| |||||||| Sbjct 5932 -CTTCCTCTTTTGTAAGAGAGCAGTGGGGATATGTTAGAAAAATATTTTTAG 5882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8572253951040