Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_010812.1 Length=2756 Score E Sequences producing significant alignments: (Bits) Value seq9745 392 6e-106 >seq9745 Length=7305 Score = 392 bits (434), Expect = 6e-106 Identities = 672/969 (69%), Gaps = 16/969 (2%) Strand=Plus/Minus Query 1602 CGAATTCTGCATTCTTGAGAGCCCACTCTTTTAATGCTGAATTTTTATCCTCATTCAAGT 1661 |||| ||||||| |||||||||| || | |||| || ||||| || | |||| Sbjct 6856 CGAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGT-CAAGA 6798 Query 1662 A-CTCTTTATATGATGATGTTGGG-CCTGGATTGCAAAGGAAGATAGTTGGGATTCCACC 1719 | ||||||||| ||| |||||| |||||||||||||||||||| || || || || || Sbjct 6797 AACTCTTTATAACTTGA-GTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCC 6739 Query 1720 TTTAATTTGAATTGGTTTCCCGTACTTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCAT 1779 ||||| || || || || ||||| | | || ||||| || |||| ||||||||| Sbjct 6738 TTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCAT 6679 Query 1780 GAATTCTTTAAAGTGCTTTAGGTAGTGGGGGTCGACGTCATCAATGACGTTATACCAAGC 1839 |||||| ||||| || |||| || | || || |||| |||||||||||| ||||| || Sbjct 6678 GAATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGC 6619 Query 1840 ATCATTGCTGTACACCTTTGGACTCAGATCTAGATGACCGCACAGATAATTATGTGGTCC 1899 ||||||| ||||| ||||| || | ||| ||||||||| | ||||| ||||| || Sbjct 6618 ATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCC 6559 Query 1900 CAGTGATCTGGCCCACATTGTTTTACCCGTACGACTATCACCTTCTATCACAATACTGAT 1959 | |||||| ||||| |||||||| || || | | |||||||||| || ||||| || Sbjct 6558 TAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCAT 6499 Query 1960 GGGTCTCCATGGCCGCGCAGCGGCATCCCTCACGTTCTCGGAGACCCATTCTTCAAGTTC 2019 |||| |||| | ||| |||| | ||||| || ||||| |||| ||| Sbjct 6498 AGGTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAAT 6439 Query 2020 TTCTGGAACTTGATCGAAAGAAGAAGAAAGAAAAGGACAAACAAAAACCTCCAACGGAGT 2079 || || || | | || | | || | ||||||| ||||| | | | |||| Sbjct 6438 CTCCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACATATATTGCAGGTGGAGC 6379 Query 2080 TGCAAAAATCCTATCTAAATTAGAATTTAAATTATGAAACTGTAATACAAAATCTTTGGG 2139 || ||| |||| ||||||| |||||| ||||||| |||| | ||||||| || Sbjct 6378 CTGGAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGG 6319 Query 2140 AGCTTTCTCCCTTAATATATTGATGGCCGCAGCTTTGGACCCTGAGTTGATTGCCTCGGC 2199 ||| ||||| | ||| | | ||| || | ||| ||||| || || | || || || Sbjct 6318 GCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGC 6259 Query 2200 ATATGCGTCGTTGGCAGATTGGCAACCTCCTC------TAGCTGATCTTCCATCGACTTG 2253 || | || || || ||||| ||| |||| | || ||||||||||| | || Sbjct 6258 GTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTG 6199 Query 2254 GAAAACTCCATGATCAAGCACGTCTCCGTCTTTCTCCATGTAGGTTTTGACATCTGTCGA 2313 ||| |||| ||||| ||||||| ||||| || || | || || | || Sbjct 6198 GAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGT---AGGA 6142 Query 2314 GCT---CTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGCTTGGGGATGTGAG 2370 ||| ||| ||||||| ||||| ||||||||||||| ||||||| |||| || || Sbjct 6141 GCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAG 6082 Query 2371 GTCGAAGAATCTGTTGTTTTGGCATTTGAATTTTCCTTCGAATTGGATGAGAATGTGCAG 2430 |||||||||||||| || |||| || | || |||||||||||||| || | ||| || Sbjct 6081 ATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAG 6022 Query 2431 GTGAGGAGTCCCATCCTCGTGCAGTTCTCTGCAAACCCTAATGAATAATTTATTTGTTGG 2490 |||| || | || || ||||||||||| | | ||| || || ||| ||| Sbjct 6021 ACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGG 5962 Query 2491 GGTTGCTAGGGCTTTTATTTGGGAAAGTGCTTCTTCTTTGTTTAGGGTGCAGTGTGGGTA 2550 ||| |||| || || || || ||||| ||||| | || | |||||| || || Sbjct 5961 GGTATTTAGGTTTTGAATAATTGAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATA 5902 Query 2551 TGTGAGGAA 2559 ||| || || Sbjct 5901 TGTTAGAAA 5893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8629317771720