Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_010818.1 Length=2737 Score E Sequences producing significant alignments: (Bits) Value seq9745 513 2e-142 >seq9745 Length=7305 Score = 513 bits (568), Expect = 2e-142 Identities = 717/1001 (72%), Gaps = 12/1001 (1%) Strand=Plus/Minus Query 1572 GGTTGGGTGAGAAAGACGAATGTTGCATTTTTTAAAGCCCAGGATTTTAATGCTGAGTTC 1631 || |||||||| || |||| ||||||| | | ||||||||| || | |||| |||| Sbjct 6872 GGCTGGGTGAGGAATGCGAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTC 6813 Query 1632 TTATCCTCGTCTAAGAACTCTTTATAACTTGCATTGGGCCCTGGATTGCAGAGGAAGATT 1691 ||||| ||||| | |||||||||||||||| ||||| ||||||||||| ||||||||| Sbjct 6812 TTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATT 6753 Query 1692 GTTGGTATTCCGCCTTTAATTTGAACTGGCTTCCCGTACTTTGTGTTGGATTGCCAGTCC 1751 || || || |||||||||| || || ||||| ||||| || | || | ||||| || Sbjct 6752 GTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCA 6693 Query 1752 CTTTGGGCCCCCATGAACTCTTTAAAGTGTTTGAGGTAGTGCGGATCGACGTCATCAATG 1811 |||| |||||||||||| || ||||| ||||| | || ||||||| |||| ||||||| Sbjct 6692 CTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAATG 6633 Query 1812 ACGTTATACCATGCGTCGTTACTGTACACCTTTGGGCTAAGATCTAAATGCCCACATAGA 1871 ||||| ||||| || || || ||||| |||||||| | ||| |||| || |||| Sbjct 6632 ACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAG 6573 Query 1872 TAGTTGTGTGGGCCTAAAGACCTAGCCCACATAGTCTTCCCAGTACGACTATCTCCCTCA 1931 || |||||||||||||| || |||||||| || || |||||||| | | || || || Sbjct 6572 TAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCT 6513 Query 1932 ATTACTATACTTTGAGGTCTAAGGGGCCGCGCAGCGGCGTCAACAACATTCTCCGACGCC 1991 | |||||||| ||||| | |||| | ||| ||| ||||| || || || Sbjct 6512 ACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACC 6453 Query 1992 CACTCTTCAAGTTCTTCTGGAACTTGATCGAAAGAAGAAGACGAAAAAGGAGAAACATAA 2051 || |||| ||| || || || | | || | | || ||||||||||||||| Sbjct 6452 CAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACATAT 6393 Query 2052 GGAGCTGGTGGCTCCTGAAAGATTCTGTTTAAATTTGCATTTAAATTATGAAATTGCAGT 2111 || ||||| |||| || || | | ||||| |||||||| ||||||| | | Sbjct 6392 ATTGCAGGTGGAGCCTGGAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAA 6333 Query 2112 ACAAAATCTTTAGGAGCCAGTTCCTTAATGA-CTCTAATAGCCTCCGACTTACTTCCCGC 2170 | ||||||| || |||| |||| | |||||| || | | ||| || | Sbjct 6332 TAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAA-GGCTGCTGTTTTAGACCCAGA 6274 Query 2171 GTTAAGTGCTGCGGCGTAAGCGTCATTGGCTGTCTGTTGCCCTCCTC------TTGCTGA 2224 || || ||| | |||||| | ||||| || | ||||| || |||| |||| || Sbjct 6273 ATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGA 6214 Query 2225 CCTTCCGTCGATCTGAAATTGTCCCCAGTCGAGAATGTCCCCGTCCTTCTCGATGTAGGA 2284 ||||| || ||||| |||| |||||| || | | || |||| ||||||||| || || Sbjct 6213 TCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGA 6154 Query 2285 CTTGACGTCGGAGCTGGATTTAGCTCCCTGTATGTTTGGTCGGAAATGTGCTGACCAGCT 2344 ||| |||| ||||||||||||| |||||||||||||||| ||||||||| ||||| | | Sbjct 6153 CTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGT 6094 Query 2345 TGGGGAGACCAAGTCGAAGAATCGCATATTCTGGCACTTGAATTTCCCTTCGAACTGGAT 2404 ||| ||||| | |||||||||| ||||| ||| || | ||||||||||| ||||| Sbjct 6093 TGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGAT 6034 Query 2405 GAGAACTCGCACGCGAGGAGTCCCATCTTCGTGAAGCTCTCTGCAGATTCTAATATAttt 2464 || || | | ||||| || | ||| ||| |||||||| || | || ||||| Sbjct 6033 AAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTT 5974 Query 2465 ttttGAAGTTGGGGTTTGGAGATTT--AATAATTGGGAAAGTGCTTCCTCTTTGGTGAGA 2522 || |||||| | || ||| ||||||| || || ||||||||||| || ||| Sbjct 5973 CTTGTTTACTGGGGTATTTAGGTTTTGAATAATT--GAGAGAGCTTCCTCTTTTGTAAGA 5916 Query 2523 GAACATTTGGGATAAGTGACGAAATAGTCTTTGGAATAAAT 2563 || || | |||||| || | ||| | ||| ||| |||| Sbjct 5915 GAGCAGTGGGGATATGTTAGAAAAATATTTTTAGAAGAAAT 5875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8569083738780