Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_010833.1 Length=2708 Score E Sequences producing significant alignments: (Bits) Value seq9745 255 1e-64 >seq9745 Length=7305 Score = 255 bits (282), Expect = 1e-64 Identities = 694/1046 (66%), Gaps = 36/1046 (3%) Strand=Plus/Minus Query 1579 GCATTCTTGATCGTCCAGTTCTTCAGAGCAAGGTTTTCCTCTTTCTCGAGGAAATCTTTA 1638 ||||| ||| | |||| ||| | ||| ||| | |||| || || || |||||| Sbjct 6848 GCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAAACTCTTTA 6789 Query 1639 TAGCTGGCCCCCTCTCCAGGATTGCAGAGCACGATTGATGGGATACCGCCTTTAATTTGA 1698 || || | ||| |||||||| || | ||||| || || |||||||||| || | Sbjct 6788 TAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTTAA 6729 Query 1699 ACAGGCTTTCCGTATTTGCAATTTGACTGCCAGTC-CTTTTGAGCTCCCATCAATTCTTT 1757 | |||||||||||| | | ||| ||||||| || |||||| || ||||| ||||| || Sbjct 6728 AAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTG-GCCCCCATGAATTCCTT 6670 Query 1758 CCAGTGCTTTAGCTTTAGGTAGTGCGGAGGGACGTCATCAATGACGTTATATTCAGCCTC 1817 | || |||| | | ||||| |||| |||||||||||| || || || Sbjct 6669 AAAATGTTTTAAAT------AACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATC 6616 Query 1818 ATTTGAATAGACCCTGGAGTTGAAGTCCAGGTGTCCACTGAGATAGTTATGGGCCCCTAA 1877 ||| || | | | | | || || || | | || || || | ||||| Sbjct 6615 ATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAA 6556 Query 1878 AGCACGAGCCCACATTGTCTTGCCTGTTCGACTATCTCCTTCGACTATCAAACTAACAGG 1937 | | |||||| ||||| || || |||| | || ||||| || | | ||| | ||| Sbjct 6555 TGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGG 6496 Query 1938 CCTGCTGGGCCGCGCAGCGGCATCTCTTCCAAAATAGTCATCGGCCCACTCTTGCATCTC 1997 | | |||| | ||| |||| || ||| | || || |||| ||||| | Sbjct 6495 TCGGTGAGGCCTCCCAGAGGCA---CTCACAACGTTTTCTTCAACCCAGTCTTGAAGAAT 6439 Query 1998 GTCGGGAACGTGAGTGAATGAGGAGAGTGGAAACGGAGGAGACCAAGTTTCC----GGAG 2053 || || |||| | |||| | | ||| |||| | || | || | |||| Sbjct 6438 CTCCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAA-ACATATATTGCAGGTGGAG 6380 Query 2054 CCTTTGCGAAAATGCGATCTAAATTACTATTTAGATTATGGAATTGGAAGAGATACTTTT 2113 ||| ||| || ||| |||||| ||||| |||| || | || ||| | || Sbjct 6379 CCTG---GAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTT 6323 Query 2114 CCGGCAACTTCTCTCTGATTATG-CTCAGCGCCGCTTCTTTCGACGGCGCGTTTAAGGCC 2172 || || || || ||||| || || || ||| ||| ||| | |||| ||| Sbjct 6322 TTGGGCGTTTTTCCCTAATTATCTCTAAG-GCTGCTGTTTTAGACCCAGAATTTAGGGCT 6264 Query 2173 TCTGCGGCAGCGTCGTTAGCTGTCTGGCAACCTCCTCTAGCACTT------CTTCCGTCG 2226 |||||| | | || ||||| | || ||| ||||| | | || ||||| || Sbjct 6263 TCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCC 6204 Query 2227 ACCTGGAAAACTCCCCATTCGACTGTATCTCCGTCCTTGTCGACATAGGACTTGACGTCG 2286 | |||||| ||||||| || | ||||||||||| ||| |||| ||| ||||| |||| | Sbjct 6203 ATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAG 6144 Query 2287 GACGACGACTTAGCCCCCTGAACGTTCGGATGGAAATGTGCTGACCTGGTTGGGGAGACA 2346 || || ||| | ||||| | ||| ||||||||||||| |||||||||||| |||||| Sbjct 6143 GAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACA 6084 Query 2347 AGGTCGAAGAATCTATTATTCGTGCACTGGAATTTCCCTTCGAACTGGATGAGGACGTGG 2406 || ||||||||||| ||||||||||| | | ||||||||||| ||||| || |||||| Sbjct 6083 AGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGG 6024 Query 2407 AGATGAGGCTCCCCATCGTCGTGGAGC-TCTCTAGCTACCTTGATAAATTTCTTCTGTGC 2465 ||| |||| |||| | || | |||| ||||| | |||||| ||||||| | | | Sbjct 6023 AGACGAGGTTCCCTGTTTTCAT-GAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTAC 5965 Query 2466 AGGAATTTCTAGGGCT--AATAATTGGGAAAGTGCCTCTTCTTTGGTTAGGCTGCATTTG 2523 || | | |||| | ||||||| || || || || ||||| || || ||| | | Sbjct 5964 TGGGGTATTTAGGTTTTGAATAATT--GAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGG 5907 Query 2524 GGGTATGTCA-AGAAATAGTTCTTGGCATTTATTCTAAAACGTTTGGGCGGTGGCATTTT 2582 || ||||| | | ||||| || || | | || | |||||| || |||||| || Sbjct 5906 GGATATGTTAGAAAAATA-TTTTTAGAAGAAATGCGAAAACGAGAACTCGTTGGCATATT 5848 Query 2583 TGTAATAAGAAGGGTGTACACCGATT 2608 ||||| | | || ||| |||| ||| Sbjct 5847 TGTAAGTAAATGGATGT-CACCAATT 5823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8477147583240