Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_010835.1 Length=2560 Score E Sequences producing significant alignments: (Bits) Value seq9745 113 7e-22 >seq9745 Length=7305 Score = 113 bits (124), Expect = 7e-22 Identities = 272/410 (66%), Gaps = 10/410 (2%) Strand=Plus/Minus Query 1436 TTATGGAGTGTCCACGACTTGAGAGATGCGTTTTCCTCTTTGGCTAGGAAATCTTTATAG 1495 ||||| || | ||| ||||| | || |||||| | |||| | | || || |||||||| Sbjct 6844 TTATG-AGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAAACTCTTTATAA 6786 Query 1496 CTGGCCCCCTCTCCAGGATTGCAGAGCACGATTGATGGGATACCCCCTTTAATTTGAACT 1555 || | ||| |||||||| || | ||||| || || || ||||||| || || Sbjct 6785 CTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTTAAAAG 6726 Query 1556 GGCTTTCCGTACTTACAATTTGATTGCCAATCTATTTGGGCCCCAATCAATTCTTTCCAG 1615 ||||||||||| | | ||| | |||||||| ||| |||||| || ||||| || | Sbjct 6725 GGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAATTCCTTAAAA 6666 Query 1616 TGCTTTAACTTTAAGTAATGCGGAGAGACGTCATCAATGACGTTATACAGTACATCGTTT 1675 || ||||| ||| ||||| |||| |||||||||||| ||| |||| || Sbjct 6665 TG------TTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATCATTG 6612 Query 1676 GAGTAAACCCTAGAATTGAAATCCAGGTGTCCACTTAGATAGTTATGTGGGCCAAGTGCA 1735 ||| | | | | ||| || || | || || || |||||||| | || Sbjct 6611 TTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAATGAT 6552 Query 1736 CGCGCCCACATCGTCTTCCCCGTCCGACTATTACCCTCGATGACAATACTTATAGGTCTG 1795 | ||||| || || ||||| || | | | ||| || | || ||||| ||||||| | Sbjct 6551 CTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGGTCGG 6492 Query 1796 ATAGGCCGCGCAGCTGCATCCCTTCCAAAATAATCATCAGCCCATTCTTG 1845 ||||| | ||| ||| || ||| | || ||| |||| ||||| Sbjct 6491 TGAGGCCTCCCAGAGGCA---CTCACAACGTTTTCTTCAACCCAGTCTTG 6445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8007956168760