Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_010837.1 Length=2666 Score E Sequences producing significant alignments: (Bits) Value seq9745 120 5e-24 >seq9745 Length=7305 Score = 120 bits (132), Expect = 5e-24 Identities = 592/929 (64%), Gaps = 39/929 (4%) Strand=Plus/Minus Query 1599 CCAGGATTGCAAAGCACGATGCATGGGATGCCCCCTTTAATTTGAACTGGTTTACCGTAT 1658 || ||||||||||| | ||| || || || ||||||| || || || || |||||| Sbjct 6773 CCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTAT 6714 Query 1659 TTACAATTTGACTGCCAGTCCTTCTGGGCCCCAATTAACTCTTTCCAGTGTTTCATCTTT 1718 | | ||| ||||||| || | | |||||| || || || || | ||||| | Sbjct 6713 CTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTT------T 6660 Query 1719 AAATATTTGGGGTCCACGTCATCAATAATATTGTAGTGTGCTTCGTTGGAATAGCACTTA 1778 ||||| || || |||| |||||| | ||||| || || ||| || || Sbjct 6659 AAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTTT 6600 Query 1779 GGGTTAAAGTCTAGGTGACCACTTAAATAATTGTGGACCCCTAAAGCACCGGCCCACATC 1838 ||| | | || ||||| | ||| |||||||| ||||| | | ||||| || Sbjct 6599 GGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATT 6540 Query 1839 GTCTTCCCTGTTCGAGAATCACCTTCAATTATTATACTAATAGGTCTCTCCGGCCGCGCA 1898 || ||||| |||| || |||||||| | | |||||| ||||||| | |||| | || Sbjct 6539 GTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCA 6480 Query 1899 GCGGCACTTCTTCCGAAATAATCGTCCGCCCAAGCTTGCATCTCTTCTGGCACGTTAGTG 1958 | |||||| || | || || |||| |||| | || || ||||| | Sbjct 6479 GAGGCACTCACAACG---TTTTCTTCAACCCAGTCTTGAAGAATCTCCGGTACGTTGTTA 6423 Query 1959 AATGATGACAG--TGGAAACGGAGGAACCCATGGCTCTGGAATTGATTTAAATATCCGTT 2016 |||| || | | ||| |||| ||| || | || | | |||||| | Sbjct 6422 AATGT--ACTGGATACAAAAGGAGAAACATATATTGCAGGTGGAGCCTGGAATATCATAT 6365 Query 2017 GAGCATTTGCAACTAGGTTGTGATATTGGAGGAAGAAGTGTTGTGGCTGTTCCTCCTTTA 2076 ||| ||| || | ||| | | | | | | || ||| ||| ||| | | Sbjct 6364 CCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGGGCGTTTTTCCCTAA 6305 Query 2077 TTATATCAAGAGC--CTGTTCCACGGACGATGTGTTTAACGCCTTTGAGTATGAATCGTT 2134 |||| || | || ||||| | ||| | |||| || | || ||| ||| || Sbjct 6304 TTATCTCTAAGGCTGCTGTTTTA--GACCCAGAATTTAGGGCTTCTGCGTAAACATCATT 6247 Query 2135 AGCTGTCTGTTTACCTCCTCGAG------CAGATCTTCCGTCGATCTGAAAATTACCCCA 2188 ||| | |||| ||| |||| | |||||||||| || ||||| || | ||||| Sbjct 6246 AGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAATTCTCCCCA 6187 Query 2189 TTCGATGTAATCTCCGTCCTTCTCAACATATGATTTGGCGTCGGAG---GATG-ACCTGC 2244 || || |||||||| |||||| | ||| || || ||| |||| ||| |||| | Sbjct 6186 ATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTGGATTTACCTCC 6127 Query 2245 ATGATTCGTACTTGCCATGACAAACATTGGAATTTCTTGGATGTCGTATATCGAAGAATC 2304 || | || ||| ||| || | || | ||||| | ||||||||||| Sbjct 6126 CTGTAT-GT--TTGG-ATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCGAAGAATC 6071 Query 2305 TGCAATTCGTGCACGTGAATTTCCCTTCGAATTGCAGCAAAGCA--TGGAGATGAGGCTC 2362 || ||||||||| ||| | |||||||||||||| | ||||| |||||| |||| || Sbjct 6070 TGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGAT--AAGCACGTGGAGACGAGGTTC 6013 Query 2363 CCCATTTTCGTGTAACTCTCTACATACACGAATATATTTCTTGTTCGTCGGTGTATCTA- 2421 || ||||| || ||||| || | || ||||||||||| || |||| || Sbjct 6012 CCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGTATTTAG 5953 Query 2422 -ATGCGAGAAGCTGAGTGAGAGCTTCTTCTTTGGGTATGGAACACTTTGGATATGTGAGG 2480 | || | ||| ||||||||| ||||| | | || || | |||||||| || Sbjct 5952 GTTTTGAATAATTGA--GAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATATGTTAGA 5895 Query 2481 AAATAATTTTTAGACTGAATTCTAAAACG 2509 ||| ||||||||| ||| | |||||| Sbjct 5894 AAAATATTTTTAGAAGAAATGCGAAAACG 5866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8343998668320