Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_010840.1 Length=2756 Score E Sequences producing significant alignments: (Bits) Value seq9745 338 1e-89 >seq9745 Length=7305 Score = 338 bits (374), Expect = 1e-89 Identities = 686/1001 (69%), Gaps = 47/1001 (5%) Strand=Plus/Minus Query 1586 GAAGACTGCATTCTTCAATGCCCACTGTTTCAGTGCTGCATTCTTTTCTTCGTCCAAGAA 1645 |||||||||||| | | ||||| || | ||||| ||||| |||||||| | || Sbjct 6855 GAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAAA 6796 Query 1646 TTCTTTATAGCT-GCTTTGTGGTCCTTTATTGCACAAGAAGATAGTGGGAATGCCGCCTT 1704 |||||||| || | ||| |||||| |||||| | |||||| ||||| || ||||||| Sbjct 6795 CTCTTTATAACTTGAGTTG-GGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTT 6737 Query 1705 TAATCATCATCGGCTTTCCGTATTTTGTGTTGCTTTGCCAGTCACGCTGGGCCCCCATGA 1764 ||| | |||||||||||| || | || ||||| |||| | ||||||||||| Sbjct 6736 TAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGA 6677 Query 1765 ATTCTTTAAAGTGCTTTAGATAGTGGGGATCAACGTCATCAATGACGTTGTACCAAGCAT 1824 |||| ||||| || |||| ||| | |||||||||| |||||||||||||||||| |||| Sbjct 6676 ATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCAT 6617 Query 1825 CGTTACTGTAAACCCTAGGGTTTAGATCCAAGTGACCGCACAAGTAATTGTGGGGTCCCA 1884 | || |||| | ||| ||| ||| | |||||||| ||||||||||| || || | Sbjct 6616 CATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTA 6557 Query 1885 AACTACGCGCCCACATTGTTTTGCCCGTACGACTATCGCCCTCCAATACTAACCCTATGG 1944 | | ||||| |||||||| || || | | || || || | |||| | || | Sbjct 6556 ATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAG 6497 Query 1945 GTCTAATCGGGAGCGCAGCGGAAAAAGGCCGCGCAGCGGAACACCTCAAATTTGACGACA 2004 ||| || | ||||| | ||| || || | ||| || | || Sbjct 6496 GTC------GGTG------------AGGCCTCCCAGAGGCACTCA-CAACGTTTTCTTCA 6456 Query 2005 -CCCAATC--GACGAGTTCTGGCGGAACTCTGTCGAAGG-AC--GAAACAGTAAATGGCG 2058 |||| || || || | || ||| || ||| || | || || ||| || || | Sbjct 6455 ACCCAGTCTTGAAGAAT-CTC-CGGTACGTTGTTAAATGTACTGGATACA---AAAGGAG 6401 Query 2059 AACGATAAACTTCGATTCGAGAAGGAAAAATCCGATCTAAATTTGTCATTAAAT-TGTGA 2117 || ||| | | | | ||| | || ||| ||| ||||| | |||| ||| | ||| Sbjct 6400 AAACATATATTGCAGGTGGAGCCTGGAATATCATATCCAAATTAG-CATTTAATCTATGA 6342 Query 2118 AACTGCAACACATAATCTTTTGGTGCTAATTCTTTTAGCACCTTCAATGCGTCTTCTTTA 2177 || | || |||||||||||| | ||| | | | || || || || |||| Sbjct 6341 AAACGTAAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTA 6282 Query 2178 TTTCCAGTATTAATTGCTTGTGCGTATGCATCGTTAGCTGTTTGTTGACCACCACGAG-- 2235 |||| ||| | |||| |||||| |||| ||||| | ||||||||| || | | Sbjct 6281 GACCCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTA 6222 Query 2236 ----CAGATCGTCCATCGATCTGGAAAACACCCCACTCTAAAACGTCTCCGTCTTTGTCG 2291 |||||| |||||| |||||||| | ||||| || | ||||||| || ||| Sbjct 6221 GTTGCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCG 6162 Query 2292 ATGTATGTCTTGACATCTGACGCTG-ATTTAGCTCCCTGAATGTTCGGATGGAAATGTGC 2350 || || | ||| || | || |||| ||||| ||||||| ||||| ||||||||||||| Sbjct 6161 ATATACGACTTCACGTAGGA-GCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGT 6103 Query 2351 TGACCGACTTGGGGCAACCAAGTCGAAGAATCTGTTATTTTTGCACTGGAATTTTCCTTC 2410 ||||| |||| | || | ||||||||||||||||| |||| | | || ||||| Sbjct 6102 TGACCTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTC 6043 Query 2411 AAATTGGATGAGAACATGGATATGCGGAGACCCATCTTCGTGAAGCTCTCTGCAGATTTT 2470 |||||||| || || |||| | | || || | ||| ||| |||||||| || || Sbjct 6042 GAATTGGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTT 5983 Query 2471 TATGAATTTCTTTGATGTAGGGGTTTCTAGGTTTTG--TAATTGGGAAAGTGCCTCTTCT 2528 ||| ||||||| | ||||| | ||||||||| ||||| || || || || ||| Sbjct 5982 GATGTATTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAATT--GAGAGAGCTTCCTCT 5925 Query 2529 TTAGTTAGAGAGCACTTTGGATATGTAAG-GAAATAGTTTT 2568 || || |||||||| | |||||||| || ||||| |||| Sbjct 5924 TTTGTAAGAGAGCAGTGGGGATATGTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8629317771720