Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_010946.1 Length=2724 Score E Sequences producing significant alignments: (Bits) Value seq9745 565 4e-158 >seq9745 Length=7305 Score = 565 bits (626), Expect = 4e-158 Identities = 720/980 (73%), Gaps = 22/980 (2%) Strand=Plus/Minus Query 1584 GAAGATTGCATTCTTTAATGCCCACTGCTTCAGTGCTGAATTCTTATCCTCTTCCAAGTA 1643 ||||| |||||| | | ||||| ||| | |||| |||||||| || || | | Sbjct 6855 GAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAAA 6796 Query 1644 CTCTTTATATGATGACGTTGGTCCTGGATTGCATAGGAAGATTGTCGGGATACCACCTTT 1703 ||||||||| ||| | |||||||||||||| ||||||||||| || || || ||||| Sbjct 6795 CTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTT 6736 Query 1704 AATTTGAATTGGCTTTCCGTA-CTTCGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGA 1762 || || || ||||||||||| |||| | || ||||| || |||| ||||||||||| Sbjct 6735 AACTTAAAAGGGCTTTCCGTATCTTC-TATTATACTGCCAATCACTTTTGGCCCCCATGA 6677 Query 1763 ATTCTTTGAAATGCTTTAAATAGTGGGGGTCGACGTCATCAATGACGTTGTACCATGCAT 1822 |||| || ||||| |||||||| | || || |||| |||||||||||||||||| |||| Sbjct 6676 ATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCAT 6617 Query 1823 CGTTGCTGTACACCTTTGGACTCAGATCTAGATGACCGCACAGATAATTATGTGGGCCCA 1882 | ||| ||||| ||||| || | ||| ||||||||| | ||||| |||||||| | Sbjct 6616 CATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTA 6557 Query 1883 ATGAACGAGCCCACATTGTCCTTCCTGTACGACTCTCACCCTCTATGACAATACTTATGG 1942 |||| | |||||| ||||| | || || | | |||||| |||| || ||||| || | Sbjct 6556 ATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAG 6497 Query 1943 GTCTATTTGGCCGCGCAGCGGAACACCCCACGTTCTCAGAAACCCACTCTTCAAGTTCTT 2002 ||| | |||| | ||| || || | | ||||| || |||||| |||| ||| | Sbjct 6496 GTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCT 6437 Query 2003 CTGGAACTTGATCGAATGAAGAAGAAAGAAAAGGACAAACAAAAACCTCTAAAGGAGGTG 2062 | || || | | |||| | || | ||||||| ||||| | | | ||| || | Sbjct 6436 CCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACATATA---TTGCAGGTGGAG 6380 Query 2063 C---AAAAATCCTATCTAAATTAGAATTTAAATTATGAAATTGAAAAATATAATCTTTTG 2119 | || ||| |||| ||||||| |||||| ||||||| | ||| ||||||||||| Sbjct 6379 CCTGGAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTG 6320 Query 2120 GGAGTTTCTCCCTTATTATACTTAGTGCTGCTTCTTTGGAACCTGCGTTTAAGGCTTCTG 2179 || |||| ||||| ||||| || |||||| ||| || || | |||| |||||||| Sbjct 6319 GGCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTG 6260 Query 2180 CGCATGCGTCGTTA---GAATTCTGGCACCCTCCTCTA---GCACTTCGACCGTCGATCT 2233 || | | || ||| || | || | ||||| | || ||| || || || |||| Sbjct 6259 CGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCT 6200 Query 2234 GGAATTCTCCCCAGTCGAGGGTGTCTCCGTCCTTGTCCAGGTAGGATTTGACGTCGGAGC 2293 ||||||||||||| || | || ||||||| ||| || | || || || |||| ||||| Sbjct 6199 GGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGC 6140 Query 2294 TGGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGTAGACTTGGTTGGGGATACCAAGT 2353 |||||||| ||||||| ||||| |||||||||||||| ||| ||||||| || || | | Sbjct 6139 TGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGAT 6080 Query 2354 CGAAGAATCTGTTATTCGTGCAGTTGCATTTGCCTTCGAATTGAATGAGCACATGGAGAT 2413 |||||||||||||||||||||| || | || ||||||||||| || ||||| |||||| Sbjct 6079 CGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGAC 6020 Query 2414 GAGGGCTCCCATCTTCGTGCAGC-TCTCTACAGATTTTGATATATTTTTTATTTGTTGGG 2472 |||| || | ||| || ||| ||||| || || ||||| ||||| || ||| |||| Sbjct 6019 GAGGTTCCCTGTTTTCATG-AGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGG 5961 Query 2473 GTTTGTAGAGGTTT---TAATTGGGAAAGTGCTTCTTCCTTGGTGAGGGAGCACTGTGGA 2529 || | ||| | ||| ||||| || || ||||| || || || || ||||| || ||| Sbjct 5960 GTATTTAG-GTTTTGAATAATT--GAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGA 5904 Query 2530 TAAGTGAGAAAATAATTTTT 2549 || || |||||| |||||| Sbjct 5903 TATGTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8527870979400