Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_010947.1 Length=2755 Score E Sequences producing significant alignments: (Bits) Value seq9745 533 3e-148 >seq9745 Length=7305 Score = 533 bits (590), Expect = 3e-148 Identities = 705/969 (73%), Gaps = 13/969 (1%) Strand=Plus/Minus Query 1610 TGCATTTTTTAGTGCCCACGCCTTTAATGCAGCATTTTTGTCCTCGTCCAAGTACTCTTT 1669 ||||||| | || ||||| | ||| | || || || || || ||||| | ||||||| Sbjct 6849 TGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAAACTCTTT 6790 Query 1670 ATATGATGATGTCGGTCCTGGATTGCAGAGGAAGATTGTAGGGATCCCACCTTTAATTTG 1729 ||| ||| | |||||||||||||| ||||||||||| || ||||| ||||||| || Sbjct 6789 ATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTTA 6730 Query 1730 AATTGGTTTCCCGTA-CTTCGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTT 1788 || || || ||||| |||| | || ||||| || |||| ||||||||||||||| | Sbjct 6729 AAAGGGCTTTCCGTATCTTC-TATTATACTGCCAATCACTTTTGGCCCCCATGAATTCCT 6671 Query 1789 TAAAGTGCTTTAGGTAGTGGGGGTCGACATCATCAATGACGTTGTACCACGCGTCATTTG 1848 |||| || |||| || | || || || | |||||||||||||||||| || ||||| Sbjct 6670 TAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATCATTGT 6611 Query 1849 AATAAACCTTAGGGCTTAAGTCCAGGTGACCACACAAATAATTGTGTGGACCTAACGACC 1908 || || ||||||| || ||||| || || ||||||||||| ||||| || | Sbjct 6610 TGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAATGATC 6551 Query 1909 TAGCCCACATGGTCTTGCCGGTACGACTATCGCCCTCTATTACAATACTAATCGGTCTCC 1968 ||||||| || || || || || | | || || |||| || ||||| || |||| Sbjct 6550 TAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGGTCGGT 6491 Query 1969 AAGGCCGCGCAGCGGCACTCTTCACATTCTCAGAGACCCAGACCCCAAGTTCCTCGGGAA 2028 ||||| | ||| ||||||| || || || |||||| | ||| ||| || | Sbjct 6490 GAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCTCCGGTA 6431 Query 2029 CTTGATTAAAAGAAGAAGAAAGAAAAGGAGAAACATAAACCTCCAATGGAGGTGTAAAAA 2088 | | ||||| | | || | ||||||||||||||| | | ||||| || | Sbjct 6430 CGTTGTTAAATGTACTGGATACAAAAGGAGAAACATATATTGCAGGTGGAGCCTGGAATA 6371 Query 2089 TCCTATCTAAATTTGAATTTAAATTATGAAACTGAAAAATATAATCTTTTGGGAGTTTCT 2148 || |||| ||||| | |||||| ||||||| | ||| ||||||||||||| |||| | Sbjct 6370 TCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGGGCGTTTTT 6311 Query 2149 CCCTTATTATTGCTAATGCAGCTTCTTTTGAACCTGCATTTAACGCCTCTGCACATGCGT 2208 |||| ||||| |||| || ||| ||| || || | ||||| || ||||| | | | Sbjct 6310 CCCTAATTATCTCTAAGGCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGTAAACAT 6251 Query 2209 CATTAGC--ATT-CTGGCAGCCTCCCCTA---GCACTTCTTCCGTCGACCTGGAACTGAC 2262 ||||||| ||| || | |||| || ||| |||||| || | |||||| | | Sbjct 6250 CATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAATTCTC 6191 Query 2263 CCCATTCAATGGTGTCTCCATCCTTGTCGATGTAGGACTTGACATCGGAGCTGGATTTAG 2322 |||| ||||| || ||||| | ||| ||||| || ||||| || | ||||||||||||| Sbjct 6190 CCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTGGATTTAC 6131 Query 2323 CTCCCTGAATGTTTGGATGGAAATGTGTTGACCGGGTTGGGGATACCAGGTCGAAGAATC 2382 ||||||| ||||||||||||||||||||||||| |||||| || || || |||||||||| Sbjct 6130 CTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCGAAGAATC 6071 Query 2383 TCTGATTCGTGCAGTTGAATTTGCCTTCGAACTGCACGAGCACGTGGAGATGAGGGCTCC 2442 | | ||||||||| || | || |||||||| || | |||||||||||| |||| || Sbjct 6070 TGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACGAGGTTCCC 6011 Query 2443 CATCCTCGTGCAATTCTCTGCAAATTTTTATGAATTTTTTATTGGTAGGGGTTTGCAGGT 2502 | || || |||||||||||| || ||| |||| || || ||||| | |||| Sbjct 6010 TGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGTATTTAGGT 5951 Query 2503 TCTG--TAATTGGGAAAGTGCTTCCTCTTTGGTGAGAGAGCACTGTGGGTATGTTA-AGA 2559 | || ||||| || || ||||||||||| || |||||||| || || ||||||| | | Sbjct 5950 TTTGAATAATT--GAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATATGTTAGAAA 5893 Query 2560 AATAATTTT 2568 |||| |||| Sbjct 5892 AATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8626147559460