Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_010949.1 Length=2561 Score E Sequences producing significant alignments: (Bits) Value seq9745 212 1e-51 >seq9745 Length=7305 Score = 212 bits (234), Expect = 1e-51 Identities = 621/949 (65%), Gaps = 41/949 (4%) Strand=Plus/Minus Query 1465 ATGTTTGTCTAGGAAGTCTTTATAACTAGCCCCCTCTCCTGGATTGCAGAGCACGATTGA 1524 || || ||| || || ||||||||||| | |||||||||||| || | ||||| Sbjct 6810 ATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGT 6751 Query 1525 TGGGATTCCTCCTTTAATTTGAACTGGCTTCCCGTATTTGCAGTTGCTTTGCCAGTCACG 1584 || || || ||||||| || || ||||| |||||| | | || ||||| |||| Sbjct 6750 GGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACT 6691 Query 1585 TTGGGCCCCAATGAGCTCTTTCCAATGTTTTAGCTTTAGGTATTGCGGAGTGACATCATC 1644 || |||||| |||| || || ||||||||| | | ||||| || | ||| Sbjct 6690 TTTGGCCCCCATGAATTCCTTAAAATGTTTTAAAT------AACGCGGATCAACGTTATC 6637 Query 1645 AATGACGTTATA--ATGCACCTCATTTGAATAAACCCTAGAATTAAAATCTAGATGTCCA 1702 ||||||||| || | ||| ||||| || | | | | ||| ||| || Sbjct 6636 AATGACGTTGTACCAGGCA--TCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCG 6579 Query 1703 CTCAGATAATTATGTGGGCCTAATGCACGAGCCCACATCGTCTTTCCTGTACGACTATCA 1762 | | ||||| ||||||||||||| | |||||| || || || || || | | ||| Sbjct 6578 CATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCA 6519 Query 1763 CCCTCAATTATAATACTAATAGGTCTCTCCGGCCGCGCAGCGGCACCCCTTCCGAAATAT 1822 || || | | ||||| ||||||| | |||| | ||| ||||| | || | | Sbjct 6518 CCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCACAACG---TTT 6462 Query 1823 TCGTCAGCCCACTCTTGCATCTCGTCAGGAACATTAGTGAAGGA---GGAAAGTTGAAAC 1879 || ||| |||| ||||| | || || || || | || | ||| | ||| Sbjct 6461 TCTTCAACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACTGGATAC---AAAA 6405 Query 1880 GGAGAAACCCATGGCTC---TGGAGCCTTTGCAAATATTCTCTGGACATGTGTTCTTATT 1936 |||||||| || | |||||||| ||||| | | | || | ||| | Sbjct 6404 GGAGAAACATATATTGCAGGTGGAGCCTGG---AATATCATATCCAAATTAGCATTTAAT 6348 Query 1937 TTATCCAGATGTAGAACATAATCTCGAGGTTGCTCTTCTTTTAATATATTGAGTGCCGTG 1996 ||| | | ||| | ||||||| || | | ||| | | ||| | | || | Sbjct 6347 CTATGAAAACGTAAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAGGCTGCT 6288 Query 1997 GTTGGATTATCTGCGTTGAGAACCTTGGCATAAGTGTCGTTTGCAGATTGGCAACCTCCT 2056 ||| | | | || || | | || ||| || || || ||||| ||| ||| Sbjct 6287 GTTTTAGACCCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCT 6228 Query 2057 CTAG------CTGATCTTCCATCGATCTGGAAAGTTCCAAAATCAATGAAGTCTCCGTCT 2110 || | | ||||||||||| |||||||| ||| ||||||| ||||||| Sbjct 6227 CTTGTAGTTGCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGC 6168 Query 2111 TTCTCCATGTAGGTCTTGACGTCTGACGAGCT---TTTAGCTCCCTGAATGTTTGGATGG 2167 ||||| || || | ||| |||| | ||||| |||| ||||||| |||||||||||| Sbjct 6167 TTCTCGATATACGACTTCACGT---AGGAGCTGGATTTACCTCCCTGTATGTTTGGATGG 6111 Query 2168 AAATGTGCTGATCTGGTTGGGGATACCAAATCGAAGAATCGTTGATTGTGGCATTTGAAT 2227 ||||||| ||| |||||||| || || | ||||||||||| | ||| |||| || | Sbjct 6110 AAATGTGTTGACCTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTAC 6051 Query 2228 TTGCCTTCGAACTGTATAAGCACGTGGAGATGAGGTTCCCCATCTTCGTGAAGTTCTCTG 2287 || |||||||| || ||||||||||||||| ||||||||| | ||| ||| ||||||| Sbjct 6050 TTCCCTTCGAATTGGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTG 5991 Query 2288 GTTACGCGAATAAATTTCTTGTTGGTAGGTGTTTGAAGTGCCTG--TAATTGTGAAAGAG 2345 | || |||||||||| || || | || || |||| ||| |||| Sbjct 5990 CAAATCTTGATGTATTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAAT--TGAGAGAG 5933 Query 2346 CTTCGTCTTTAGTTAATGAACAATGAGGATATGTAAGGAAGAAATTTTT 2394 |||| ||||| || | || || || |||||||| || || | |||||| Sbjct 5932 CTTCCTCTTTTGTAAGAGAGCAGTGGGGATATGTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8011126381020