Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_010952.1 Length=2605 Score E Sequences producing significant alignments: (Bits) Value seq9745 360 3e-96 >seq9745 Length=7305 Score = 360 bits (398), Expect = 3e-96 Identities = 635/910 (70%), Gaps = 38/910 (4%) Strand=Plus/Minus Query 1547 CCAGGATTGCACAGCACGATTGATGGGATTCCACCTTTAATTTGGACTGGCTTCCCGTAT 1606 || |||||||| || | ||||| || || || ||||||| || | ||||| |||||| Sbjct 6773 CCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTAT 6714 Query 1607 TTGCAATTTGACTGCCAGTCTTTTTGGGCCCCGACAAGTTCTTTCCAGTGCTTTAGCTTT 1666 | | ||| ||||||| || ||| |||||| | | ||| || | || |||| | Sbjct 6713 CTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAAT-- 6656 Query 1667 AGGTAGTGCGGTGCAACGTCATCAATGACGTTATAATCCA--CCTCGTTCGAGAACACTC 1724 | |||| |||||| |||||||||||| || ||| | || || | || | Sbjct 6655 ----AACGCGGATCAACGTTATCAATGACGTTGTA--CCAGGCATCATTGTTGTACGTTT 6602 Query 1725 TTGGATTGAAGTCCAGATGTCCACTTAGGTAATTGTGTGGGCCTGAGGCACGAGCCCACA 1784 |||| | | || ||| || | || |||||||||||||||| | | | |||||| | Sbjct 6601 TTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATA 6542 Query 1785 TCGTCTTCCCTGTTCTCGAATCACCTTCCACTATGATACTCATCGGTCTCTCTGGCCGCG 1844 | || ||||| ||||| | |||||||| || | |||||||| |||| | |||| | Sbjct 6541 TTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCC 6482 Query 1845 CAGCGGAACCTCTCCCAAAATAATCGTCAGCCCACTCTTGCATCTCGTCAGGAACGTTAG 1904 ||| || || || ||| | || ||| |||| ||||| | || || ||||| | Sbjct 6481 CAGAGGCAC---TCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCTCCGGTACGTT-G 6426 Query 1905 TGAAAGAGGAGAGGGGA--AACGGAGGAGCCCATGGTTCCGG---ATCCTTCATGAAAAT 1959 | ||| | | || | || |||| | | || | | || | ||| ||| || Sbjct 6425 TTAAAT-GTACTGGATACAAAAGGAGAAACATATATTGCAGGTGGAGCCTG---GAATAT 6370 Query 1960 CCTATCCAGGTTACTGGATAGGTTGTGATACTG-AAAGAGAAACTTCTCCGGCAACTTCT 2018 | |||||| ||| || | ||| | | ||| | || | | ||| || | Sbjct 6369 CATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGGGCGTTTT-T 6311 Query 2019 CCTTGACTATTCTC-ATGGCCGCCTCCTTTGTTCCAGAATTTAATGCTTCGGCGGCTGCA 2077 || | | ||| ||| | ||| || || | |||||||||| ||||| ||| || Sbjct 6310 CCCTAATTAT-CTCTAAGGCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGTAAACA 6252 Query 2078 TCGTTAGATGTTTGCTGACCGCCTCGAGCACTT------CTTCCGTCGATCTGGAACACT 2131 || |||| | ||| ||||| |||| | | || ||||| || |||||||| || Sbjct 6251 TCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAATTCT 6192 Query 2132 CCCCATTCGATGGTGTCCCCGTCCTTCTCGACGTAGGACTTGACGTCGGAGCTGGATTTA 2191 ||||| || || || || |||| |||||||| || ||||| |||| ||||||||||||| Sbjct 6191 CCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTGGATTTA 6132 Query 2192 GCTCCCTGTATGTTCGGATGGAAATGTGTTGACCTACTTGGGGACACCAGATCGAACAAT 2251 ||||||||||||| |||||||||||||||||||| |||| || || |||||||| ||| Sbjct 6131 CCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCGAAGAAT 6072 Query 2252 CTGTTATTCGTGCAGTTGAATTTCCCTTGGAACTGGATGAGGACGTGGAGATGAGGCTGC 2311 |||||||||||||| || | ||||||| ||| ||||| || ||||||||| |||| | | Sbjct 6071 CTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACGAGGTTCC 6012 Query 2312 CCATCTTCGTGGAACTCTCTGCAGATTTTGATGAATTTCTTGTTAACCGGAGTGTTTAGG 2371 | | ||| || |||||||| || |||||| |||||||||| || || || |||||| Sbjct 6011 CTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGTATTTAGG 5952 Query 2372 TTTGT--TAATTGGGAAAGTGCTTCTTCTTTGGTAAGAGAGCACTGAGGATATGTGAG-G 2428 ||| |||||| || || |||| ||||| ||||||||||| || |||||||| || Sbjct 5951 TTTTGAATAATTGAGAGAG--CTTCCTCTTTTGTAAGAGAGCAGTGGGGATATGTTAGAA 5894 Query 2429 AAATAGTTTT 2438 ||||| |||| Sbjct 5893 AAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8150615720460