Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_011024.1 Length=2771 Score E Sequences producing significant alignments: (Bits) Value seq9745 479 5e-132 >seq9745 Length=7305 Score = 479 bits (530), Expect = 5e-132 Identities = 715/1006 (71%), Gaps = 24/1006 (2%) Strand=Plus/Minus Query 1595 TGAACAATGGCTGGTGGATGGTGACGAAGATCGCATTCTTAATAGCCCAATTTTTTAATG 1654 |||| ||||||||| || | |||||| ||||| | | |||||| || ||| Sbjct 6880 TGAATAATGGCTGGGTGAGGAATGCGAAGACTGCATTTATGAGAGCCCAGGACTT-AATA 6822 Query 1655 GTTG-GtttttttCTTCGTCGAGATATTCTTTAAATGATGATTGTGGGCCTGGATTGCAG 1713 | || ||| || |||||||| ||| | |||||| | ||| | || ||||||||||| Sbjct 6821 GCTGCGTTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAA 6762 Query 1714 AGGAAGATAGTGGGAATGCCTCCTTTAATTTGAATGGGCTTCCCATACTTGGTGTTGCTC 1773 |||||||| ||||| || || ||||||| || || |||||| || || | | || | Sbjct 6761 AGGAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATAC 6702 Query 1774 TGCCAGTCTCTTTGGGCCCCCATAAACTCTTTAAAGTGCTTTAAATAATGCGGGTCGACG 1833 ||||| || |||| ||||||||| || || ||||| || ||||||||| |||| || ||| Sbjct 6701 TGCCAATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGATCAACG 6642 Query 1834 TCATCAATGACGTTATACCAAGCATTATTGCTGTATACTTTTTGACTGAGGTCAAGATGG 1893 | |||||||||||| ||||| |||| |||| |||| |||| | || | ||| ||| Sbjct 6641 TTATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGA 6582 Query 1894 CCGCACAAATAATTATGTGGGCCTAAGGAACGGGCCCACATGGTCTTTCCTGTCCGGCTG 1953 ||||| || ||||| ||||||||||| || | ||||| || || || || || | Sbjct 6581 CCGCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCC 6522 Query 1954 TCACCCTCAATCACTATACTTACCGGTCTCCAAGGCCGCGCAGCGGCATCCATGACGTTC 2013 ||||| || | |||||||| | |||| ||||| | ||| |||| || ||||| Sbjct 6521 TCACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTT 6462 Query 2014 TCGGCGACCCACTCTTCAAGTTCATCTGGAACTTGATTAAAAGAAGAAGAAAGAAATGGA 2073 || | ||||| |||| ||| || || || | ||||| | | || | ||| ||| Sbjct 6461 TCTTCAACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACTGGATACAAAAGGA 6402 Query 2074 GAAACATAAACTTCTAAAGGAGGA--CT-AAAAATCCTATCTAAATTTGAACTTAAATTA 2130 |||||||| | | | ||| ||| || || ||| |||| ||||| | | |||| || Sbjct 6401 GAAACATATATTGC---AGGTGGAGCCTGGAATATCATATCCAAATTAGCATTTAATCTA 6345 Query 2131 TGAAATTGTAAAATATAGTCCTTTGGGGCCTTCTCTTTTAATATATTGAGGGCCTCGGAT 2190 ||||| ||||| ||| || |||||| || || | | ||| | | ||| | | | Sbjct 6344 TGAAAACGTAAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTT 6285 Query 2191 TTACTGCCTGAATTGAGTGCTTCGGCATATGCGTCGTTGGCAGATTGCTGACCTCCTC-- 2248 ||| || ||||| || ||||| || || | || || || ||||| ||||| |||| Sbjct 6284 TTAGACCCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTT 6225 Query 2249 ----TAGCTGATCTGCCATCGATTTGGAAAACTCCAAAATCAATGAATTCTCCGTCTTTC 2304 | || ||||| ||||| || ||||| |||| ||||||| ||||||| ||| Sbjct 6224 GTAGTTGCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTC 6165 Query 2305 TCCACGTAGGTCTTGACATCTGTTGAGCT---CTTAGCTGCCTGAATGTTCGGATGGAAA 2361 || | || | ||| || | ||||| ||| || |||| ||||| ||||||||| Sbjct 6164 TCGATATACGACTTCACGT---AGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAA 6108 Query 2362 TGTGCTGACCTGTTTGGGGATACCAGGTCGAAGAACCGTTGGTTTTTACATTGGTATTTG 2421 |||| ||||||| |||| || || || |||||||| | | || | ||| ||| || Sbjct 6107 TGTGTTGACCTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTC 6048 Query 2422 CCTTCGAATTGGATAAGCACATGGAGATGTGGTTCCCCATTCTCGTGGAATTCTCTGCAA 2481 |||||||||||||||||||| |||||| | ||||||| || || || |||||||||| Sbjct 6047 CCTTCGAATTGGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAA 5988 Query 2482 ACTTTGATGTATTTTTTATTTGTTGGGGTTTCTAGGTTTT--TTAATTGGGAAAGTGCTT 2539 | ||||||||||| || ||| |||||| | |||||||| ||||| || || |||| Sbjct 5987 ATCTTGATGTATTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAATT--GAGAGAGCTT 5930 Query 2540 CCTCTTTAGAGAGATAACAATTGGGATATGTCAGGAAATAATTTTT 2585 ||||||| | ||| | || | ||||||||| || ||| |||||| Sbjct 5929 CCTCTTTTGTAAGAGAGCAGTGGGGATATGTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8676870955620