Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_011052.2 Length=2780 Score E Sequences producing significant alignments: (Bits) Value seq9745 396 5e-107 >seq9745 Length=7305 Score = 396 bits (438), Expect = 5e-107 Identities = 624/897 (70%), Gaps = 18/897 (2%) Strand=Plus/Minus Query 1703 TCCTGGATTGCAGAGGAAGATAGTGGGTATTCCACCTTTAATTTGAACTGGCTTTCCGTA 1762 |||||||||||| |||||||| ||||| || || ||||||| || || ||||||||||| Sbjct 6774 TCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTA 6715 Query 1763 TTTACAATTGCTTTGCCAGTCTTTCTGGGCCCCCATGAACTCTTTAAAGTGCTTTAGGTA 1822 | | | ||| ||||| || | | |||||||||||| || ||||| || |||| || Sbjct 6714 TCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATA 6655 Query 1823 TTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTGTTGCTATACACCTTTGGACT 1882 | || | |||| |||||||||||| ||||| ||| ||| | ||| ||||| || Sbjct 6654 ACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCT 6595 Query 1883 CAAGTCCAAATGCCCACACAGATAATTATGTGGGCCTAAGGATCTAGCCCAAACTGTTTT 1942 | || |||| || || | ||||| ||||||||||| ||||||||||| | |||||| Sbjct 6594 TATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTT 6535 Query 1943 ACCCATTCTACTTGGGCCTTCTATAACTATACTTATGGGCCTCTCTGGCCGCGCAGCGGC 2002 || ||||| ||||||| ||||||||| || || | | |||| | ||| ||| Sbjct 6534 CCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGC 6475 Query 2003 ATCCATGACATTCTCAGCAGCCCAATCACTGATAATGTCAGGAACATTATTGAAAGAAGA 2062 | || || || || || |||| || | ||| || || || || || || | | Sbjct 6474 ACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTAC- 6416 Query 2063 AATGGA---AAAAGGANNNNNNNNNNNNNNNNNNNNNNNNNNNAATATCCTATCTAAATT 2119 |||| ||||||| |||||| |||| ||||| Sbjct 6415 --TGGATACAAAAGGAGAAACATATATTGCAGGTGGAGCCTGGAATATCATATCCAAATT 6358 Query 2120 GCTAACTAAATTATGATATTG-AAATATAAATTTTTCAGGGAGTTTCTCCCTGATTATTT 2178 | ||| ||||| | | ||||| ||| ||| ||| |||| ||||| ||||| | Sbjct 6357 AGCATTTAATCTATGAAAACGTAAATAATAATCTTTT-GGGCGTTTTTCCCTAATTATCT 6299 Query 2179 GTAAAGCAGCGTCCTTACTTCCTGCATTTAATGCTTCTGCTGCTGCGTCGTTAGCAGTCT 2238 ||| || || ||| || | ||||| |||||||| | || ||||| | | Sbjct 6298 CTAAGGCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATT 6239 Query 2239 GCTGGCCTCCTCTAG------CAGATCTGCCGTCGACCTGGAATTCTCCCCATTCCAATG 2292 | || || ||||| | ||||||| || || | ||||||||||||||| || | || Sbjct 6238 GTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTG 6179 Query 2293 TGTCTCCATCCTTATCGACGTAGGACTTGACGTCGGAGCTGGATTTAGCTCTTTGAATGT 2352 | ||||| | ||| |||| || ||||| |||| ||||||||||||| ||| || |||| Sbjct 6178 TATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGT 6119 Query 2353 TAGGATGGAAATGTGCTGACCTGGTTTGAGAGACCAAGTCGAATAGGCGTTGGTTCGTGC 2412 | ||||||||||||| |||||||||| ||||||| | ||||| | | | ||||||| Sbjct 6118 TTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGC 6059 Query 2413 ACTGGAATTTCCCTTCGAATTGCAGAAGCACGTGGAGATGAGGTTGCCCATCCTCGTGTA 2472 | | | |||||||||||||| | ||||||||||||| |||||| || | || || Sbjct 6058 ATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAG 5999 Query 2473 GTTCCCTGCAGATCTTAATGAATTTTTTATTTACTGCAG--TTGGGATATTTAGTATTTG 2530 ||| ||||| ||||| ||| |||| || ||||||| | || | | || | || ||| Sbjct 5998 CTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAATTG 5939 Query 2531 GGCTAATGCTTCTTCTTTGGAGATAGAGCATTGGGGATATGTAAGAAAATAATTTTT 2587 | | ||||| ||||| | | |||||| ||||||||||| |||||| |||||| Sbjct 5938 AG--AGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATATGTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8705402865960