Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_011096.1 Length=2794 Score E Sequences producing significant alignments: (Bits) Value seq9745 585 5e-164 >seq9745 Length=7305 Score = 585 bits (648), Expect = 5e-164 Identities = 715/968 (74%), Gaps = 12/968 (1%) Strand=Plus/Minus Query 1645 GCATTTTTTATTGCCCACGCTTTCAATGGTGCATTTTTCACCTCGTCTAGATACTCCTTA 1704 |||||| | | ||||| | || | | ||| || || | ||||| ||| |||| ||| Sbjct 6848 GCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAAACTCTTTA 6789 Query 1705 TATGATGATGTCGGGCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGA 1764 || ||| | || ||||||||||| |||||||| ||||| || || ||||||| || | Sbjct 6788 TAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTTAA 6729 Query 1765 ATGGGCTTCCCGTA-CTTCGTGTTGCTTTGCCAGTCTCTTTGGGCCCCCATGAACTCTTT 1823 | |||||| ||||| |||| | || ||||| || |||| |||||||||||| || || Sbjct 6728 AAGGGCTTTCCGTATCTTC-TATTATACTGCCAATCACTTTTGGCCCCCATGAATTCCTT 6670 Query 1824 AAAGTGTTTGAGATAGTGGGGATCGACGTCATCAATGACGTTATACCAAGCATCATTTGA 1883 ||| ||||| | ||| | ||||| |||| |||||||||||| ||||| |||||||| Sbjct 6669 AAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATCATTGTT 6610 Query 1884 ATACACCTTTGGACTCAGGTCTAGATGCCCACACAAATAATTGTGTGGACCTAGTGACCT 1943 ||| ||||| || | || ||| || || || ||||||||||| |||| ||| || Sbjct 6609 GTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAATGATCT 6550 Query 1944 GGCCCACATTGTCTTGCCTGTACGACTATCACCTTCAATAACTATACTAATCGGTCTCCA 2003 ||||| ||||| || || || | | |||||||| | ||||||||| || |||| Sbjct 6549 AGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGGTCGGTG 6490 Query 2004 AGGCCGCGCAGCGGCACTCCTGACATTCTCAGAGACCCACTCTTCAAGTTCTTCTGGAAC 2063 ||||| | ||| ||||||| || || || ||||| |||| ||| || || || Sbjct 6489 AGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCTCCGGTAC 6430 Query 2064 TTGATTAAAAGAAGAAGATAAAAAGGGAGAAATATATGGCTCCGGAGGAGCCATGAAAAT 2123 | ||||| | | |||| ||| ||||||| |||| | || |||||| ||| || Sbjct 6429 GTTGTTAAATGTACTGGATACAAAAGGAGAAACATATATTGCAGGTGGAGCCTGGAATAT 6370 Query 2124 CCTATCTAAATTATTATTTAAATTATGAAATTGTAATACAAAATCTTTCGGTGCTAATTC 2183 | |||| |||||| |||||| ||||||| |||| | ||||||| || | ||| Sbjct 6369 CATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGGGCGTTTTTC 6310 Query 2184 TTTAAGTATTGCAAGAGCTTCTGGCTTACTGCCTGAGTTAATTGCTTTGGCGTAAGCGTC 2243 ||| ||| | | ||| ||| ||| || || || | |||| |||||| | || Sbjct 6309 CCTAATTATCTCTAAGGCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGTAAACATC 6250 Query 2244 GTTTGCTGTCTGTTGTCCCCCTCTTG------CAGATCGTCCATCGATCTGAAACTCTCC 2297 || || | ||||| |||||||||| |||||| |||||| ||||| || ||||| Sbjct 6249 ATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAATTCTCC 6190 Query 2298 CCATTCAAGGGTGTCTCCGTCTTTATCGATATAGGACTTGACGTCGGAGCTGGATTTAGC 2357 ||| |||| || ||||||| || |||||||| ||||| |||| ||||||||||||| | Sbjct 6189 CCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTGGATTTACC 6130 Query 2358 TCCCTGAATGTTTGGATGGAAATGTGCTGACCTGGTTGGGGATACCAAGTCGAAGAATCT 2417 |||||| ||||||||||||||||||| |||||||||||| || || | ||||||||||| Sbjct 6129 TCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCGAAGAATCT 6070 Query 2418 GTTATTTGTGCACTGGTATTTGCCTTCGAACTGGAGAAGCACGTGGAGATGAGGCTCGCC 2477 |||||| ||||| ||| || |||||||| |||| ||||||||||||| |||| || | Sbjct 6069 GTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACGAGGTTCCCT 6010 Query 2478 ATTTTCGTGTAGCT-CTTTGCAGATTTTGATGTACTTCTTATTTGTTGGGGTGTCTAGAC 2536 ||||| || |||| || |||| || |||||||| ||||| ||| |||||| | ||| Sbjct 6009 GTTTTCATG-AGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGTATTTAGGT 5951 Query 2537 CTTGAAGTTGTTG-GAGAGTTTCCTCTTTTGATAGAGAGCATTTAGGATATGTGAGAAAG 2595 ||||| | ||| ||||| ||||||||||| |||||||| | |||||||| ||||| Sbjct 5950 TTTGAA-TAATTGAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATATGTTAGAAAA 5892 Query 2596 AAATTCTT 2603 | ||| || Sbjct 5891 ATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8744198437850