Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_011135.1 Length=2767 Score E Sequences producing significant alignments: (Bits) Value seq9745 545 4e-152 >seq9745 Length=7305 Score = 545 bits (604), Expect = 4e-152 Identities = 715/981 (73%), Gaps = 16/981 (2%) Strand=Plus/Minus Query 1614 CGAAGATCGCATTCTTTAATGCCCAGTTTTTTAGTGCAGAATTCTTATCTTCATCCAAGA 1673 |||||| ||||| | | |||||| || | || | ||||||||||| || | | Sbjct 6856 CGAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAA 6797 Query 1674 ACTCTTTATAGCTGGAATTTGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTT 1733 |||||||||| || || || |||||||||||||| |||||||| ||||| || ||||||| Sbjct 6796 ACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTT 6737 Query 1734 TAATTTGAACTGGCTTCCCGTACTTTGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGA 1793 ||| || || ||||| ||||| || |||| | ||||| || |||| ||||||||||| Sbjct 6736 TAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGA 6677 Query 1794 ATTCTTTAAAGTGCTTTAGATAGTGGGGGTCTACGTCATCAATGACGTTATACCAGGCAT 1853 |||| ||||| || |||| ||| | || || |||| |||||||||||| |||||||||| Sbjct 6676 ATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCAT 6617 Query 1854 CATTACTGTAGACCTTTGGACTAAGGTCTAAATGACCACACAGATAATTATGTGGTCCCA 1913 |||| |||| ||||| || | || ||||||| || | ||||| ||||| || | Sbjct 6616 CATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTA 6557 Query 1914 GTGATCTGGCCCACATAGTCTTTCCCGTACTACTATCACCCCTCATGACTATACTTACAG 1973 |||||| ||||| || || || || || ||| ||||| | |||||||| | || Sbjct 6556 ATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAG 6497 Query 1974 GTCTCAAAGGCCGCGCAGCGGCACTGACGACGTTCTCAGCAGCCCACTCTTCAAGTTCTT 2033 ||| ||||| | ||| |||||| || ||||| || || |||| |||| ||| | Sbjct 6496 GTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCT 6437 Query 2034 CTGGAAC-TTGATCAAGGAAGAAAGANNNNNNGGGGGAAACATAACCTTCTTTAGGAAG- 2091 | || || ||| | || | | || || |||||||| | | ||| Sbjct 6436 CCGGTACGTTGTTAAATGTACTG-GATACAAAAGGAGAAACATATATTGCAGGTGGAGCC 6378 Query 2092 TGTAAAATCCCTATCTAAATTAAGATCTAATAATGGAAATTGGAAAACAAAACCTTGGGG 2151 || || ||| |||| |||||| || |||| |||| | ||| | || ||| || Sbjct 6377 TGGAATATCA-TATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGG 6319 Query 2152 TGCTAATTCTTTAATTA-CTCTAAGAGCCTCTGACTTACTGCCTGCGTTAAGCGCTGCGG 2210 | ||| |||||| ||||||| || ||| ||| || | || || ||| | | Sbjct 6318 GCGTTTTTCCCTAATTATCTCTAAG-GCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTG 6260 Query 2211 CGTAAGCATCATACGCTGACTGT-GAcccccccTC-----TGCAGATCTCCATTCGATCT 2264 ||||| |||||| || || ||| ||||||| || ||||||||| | || |||| Sbjct 6259 CGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCT 6200 Query 2265 GAAACTCTCCCCAGTCGAGGGTGTCTCCGTCCTTCTCCAGATAGGACTTGACGTCTGAGC 2324 | || |||||||| || | || ||||||| |||||| | ||| ||||| |||| |||| Sbjct 6199 GGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGC 6140 Query 2325 TTGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGATACCAGGT 2384 | |||||| ||||||| ||||| ||||||||||||| |||||||||||| || || || | Sbjct 6139 TGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGAT 6080 Query 2385 CGAAGAATCTGTTATTTTGGCACTTGTATTTTCCTTCGAACTGGATGAGCACGTGAAGAT 2444 |||||||||||||||| ||| |||| || |||||||| ||||| |||||||| ||| Sbjct 6079 CGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGAC 6020 Query 2445 GAGGTTCCCCATTTTCATGAAGCTCTCTGCAGATTTTTATGTATTTTTTGTTGGTTGGTG 2504 ||||||||| ||||||||| |||||||| || || |||||||| ||||| ||| | Sbjct 6019 GAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGG 5960 Query 2505 TTGCTAGGTTTTG--TAATTGGGAAAGTGCTTCTTCTTTGGTGAGAGAGCATTTGGGATA 2562 | ||||||||| |||||| || || |||| ||||| || |||||||| | |||||| Sbjct 5959 TATTTAGGTTTTGAATAATTGAGAGAG--CTTCCTCTTTTGTAAGAGAGCAGTGGGGATA 5902 Query 2563 TGTTAGGAAATAATTTTTGGA 2583 |||||| ||| |||||| || Sbjct 5901 TGTTAGAAAAATATTTTTAGA 5881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8664190106580