Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_011181.1 Length=2660 Score E Sequences producing significant alignments: (Bits) Value seq9745 376 4e-101 >seq9745 Length=7305 Score = 376 bits (416), Expect = 4e-101 Identities = 687/992 (69%), Gaps = 47/992 (5%) Strand=Plus/Minus Query 1542 GCATTGTGGAGTGTCCACGATTTCAGAGCTGCATTTTCCTCCTTGTCTAGGAAGTCTTTA 1601 ||||| ||| | ||| || || | |||||| || | || | ||| || || |||||| Sbjct 6848 GCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAAACTCTTTA 6789 Query 1602 TAGCTAGCCCCCTCTCCAGGATTGCACAGCACGATTGATGGGATGCCACCTTTAATTTGA 1661 || || | ||| |||||||| || | ||||| || || || ||||||| || | Sbjct 6788 TAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTTAA 6729 Query 1662 ACTGGCTTTCCGTATTTGCAATTTGACTGCCAGTCTTTTTGAGCACCAATCAATTCCTTC 1721 | |||||||||||| | | ||| ||||||| || ||| || || || |||||||| Sbjct 6728 AAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAATTCCTTA 6669 Query 1722 CAGTGCTTTAACTTTAGATATTGCGGTGTGACATCGTCAATGACGTTGTATTCCA--CTT 1779 | || ||||| ||| |||| || | |||||||||||||| ||| | | Sbjct 6668 AAATGTTTTAA------ATAACGCGGATCAACGTTATCAATGACGTTGTA--CCAGGCAT 6617 Query 1780 CGTTCGAGTAAACCTTAGAATTGAAGTCCAGATGACCACTCAAGTAATTATGTGGGCCTA 1839 | || ||| || | | | || |||||| | |||||||| |||||||||| Sbjct 6616 CATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTA 6557 Query 1840 ACGCACGAGCCCACATCGTCTTCCCTGTCCTTGAATCACCTTCGACTATCAAACTCATAG 1899 | | | |||||| || || ||||| || || | |||||||| || | | |||||||| Sbjct 6556 ATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAG 6497 Query 1900 GTCTGAATGGCCGCGCAGCGGAACCTCTCCCAAAATATTCATCGGCCCACTCTTGCATCT 1959 ||| | |||| | ||| || || || ||| | ||| || |||| ||||| | Sbjct 6496 GTCGGTGAGGCCTCCCAGAGGCAC---TCACAACGTTTTCTTCAACCCAGTCTTGAAGAA 6440 Query 1960 CGTCGGGAACGTTAGTGAAGGAGGAGAGGTTA--AACGGAGGAACCCA-----CGGCTCC 2012 || || ||||| | || | | || || || |||| ||| | | | | Sbjct 6439 TCTCCGGTACGTTGTTAAATGT--ACTGGATACAAAAGGAGAAACATATATTGCAGGT-- 6384 Query 2013 GGAGCCTTTGAGAAAATTCTATCTAAATTAGAATTTAAATTATGAAACTGAAAAAGATAT 2072 ||||||| ||| || |||| ||||||| |||||| ||||||| | ||| ||| Sbjct 6383 GGAGCCTG---GAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAA 6327 Query 2073 TTCTCTGGCAATTTTTCCCGAATTAACTGAAGAGCCGTCTGTTTATCAGG-AGCGTTTAA 2131 | | ||| |||||||| ||||| || | || | |||||| | || |||| Sbjct 6326 TCTTTTGGGCGTTTTTCCCTAATTATCTCTAAGGCTG-CTGTTTTAGACCCAGAATTTAG 6268 Query 2132 CGCCTCAGCTGCAGCGTCATTAGCTGTCTGTTGGCCTCCCCTAGAACTC------CTTCC 2185 || || || | | |||||||| | ||||| || || || | | | ||||| Sbjct 6267 GGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCC 6208 Query 2186 GTCGACCTGGAAGTCACCCCATTCTACTGTATCTCCATCTTTGTCGATGTAAGACTTGAC 2245 || | |||||| || ||||| || | ||||||||| | || ||||| || ||||| || Sbjct 6207 ATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCAC 6148 Query 2246 GTCGGAGCTGGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTTGTTGGGGA 2305 || ||||||||||||| ||||||| ||||| ||||||||||||| |||||| ||||| || Sbjct 6147 GTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGA 6088 Query 2306 AACCAGGTCGAACAATCTGTTATTTGTG-ATTTGGACCTTTCCTTCCAATTGCAACAGGA 2364 || || ||||| ||||||||||| ||| || || || || ||||| ||||| | || | Sbjct 6087 GACAAGATCGAAGAATCTGTTATTCGTGCATGTGTAC-TTCCCTTCGAATTGGATAAGCA 6029 Query 2365 CGTGGAGGTGAGGTTCCCCATTTTCGTGAAGCTCTCTGCAAATCTTGATGAATTTCTT-A 2423 ||||||| ||||||||| ||||| ||| |||||||||||||||||| ||||||| Sbjct 6028 CGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGT 5969 Query 2424 TTAGAGGGTAATTGAATAGCTT----GCAATTGGGAAAGTGCCTCCTCTTTTGTAAGAGA 2479 ||| ||| ||| ||| || |||| || || || ||||||||||||||||| Sbjct 5968 TTACTGGGGTATT---TAGGTTTTGAATAATT--GAGAGAGCTTCCTCTTTTGTAAGAGA 5914 Query 2480 GCACTGTGGATAAGTAAGGAAAATGTTTTTAG 2511 ||| || ||||| || || ||||| ||||||| Sbjct 5913 GCAGTGGGGATATGTTAGAAAAATATTTTTAG 5882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8324977394760