Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_011268.1 Length=2743 Score E Sequences producing significant alignments: (Bits) Value seq9745 363 3e-97 >seq9745 Length=7305 Score = 363 bits (402), Expect = 3e-97 Identities = 592/845 (70%), Gaps = 28/845 (3%) Strand=Plus/Minus Query 1602 CGAACACGACATTCTTAACAGCCCAGTTCTTTAATGCTGCGTTCCTATCTTCGTCTAAAT 1661 |||| || |||| | | ||||||| ||| | ||||||||| |||||||||| | | Sbjct 6856 CGAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAA 6797 Query 1662 ACTCTTTATAGCTCGAATGGGGCCCAGGATTGCAGAGGAAGATTGTCGGAATGCCTCCTT 1721 |||||||||| || || | ||| || |||||||| ||||||||||| || || || |||| Sbjct 6796 ACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTT 6737 Query 1722 TAACTTGAACGGGCTTTCCATACTTTGTGTTGCTTTGCCAGTCTCTCTGGGCCCCCATAA 1781 |||||| || ||||||||| || || | || ||||| || || | ||||||||| | Sbjct 6736 TAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGA 6677 Query 1782 ATTCCTTGAAGTGCTTGAGATAATGCGGATCAACATCATCAATGACGTTATACCATACGT 1841 ||||||| || || || | |||| |||||||||| | |||||||||||| ||||| | | Sbjct 6676 ATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCAT 6617 Query 1842 CATTACTATAGACTCTTGGACTGAGATCCAAGTGACCGCATAAATAATTGTGTGGGCCGA 1901 |||| | || | |||| || | ||| | ||||||||||| |||||||||||||| | Sbjct 6616 CATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTA 6557 Query 1902 GAGACCGAGCCCACATTGTCTTCCCAATACGACTATCACCCTCTAAAACAATACTTATGG 1961 || | |||||| ||||| |||||| | | | ||||| |||| ||| ||||| || | Sbjct 6556 ATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAG 6497 Query 1962 GTCTAAAAGGCCGCGCAGCGGGACTGACAATATTTTCTGAGGCCCAAATCTCG-AGTTCT 2020 ||| ||||| | ||| || ||| |||| |||||| ||| | ||| | || Sbjct 6496 GTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCC-AGTCTTGAAGAATC 6438 Query 2021 TCTGGAACTCGATCAAACGAACAAAGAGGAT----AAGGAGAAACATAATCTACTCTAAG 2076 || || || | ||| | || |||| ||||||||||||| || | | | Sbjct 6437 TCCGGTACGTTGTTAAATGTAC----TGGATACAAAAGGAGAAACATA---TATTGCAGG 6385 Query 2077 AGGTG---TAAATATCTCCCTCTCTAGATTGGACTTTAAATTATGATACTGAAAAATATA 2133 || | ||||| | | || | ||| | ||||| ||||| | | ||| ||| Sbjct 6384 TGGAGCCTGGAATAT---CATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATA 6328 Query 2134 ATC-TCTGGGCATCTTCACGGA--TATAGCTAGAGCAGCTTCTGCAGACCCAGAGTTTAA 2190 ||| | ||||| | || | | ||| ||| || ||| | ||||||||| |||| Sbjct 6327 ATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACCCAGAATTTAG 6268 Query 2191 GGCCTCCGCTGCAGCATCATTAGCTGTCTGTTGACCTCCTC------TAGCAGATCTTCC 2244 ||| || || | |||||||||| | |||||||| |||| | ||||||||||| Sbjct 6267 GGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCC 6208 Query 2245 ATCGATCTGAAAGAACCCCCAGTCGATGAAATCTCCGTCCTTCTCGATATAGGACTTAAC 2304 ||| ||||| || ||||| || || |||||||| |||||||||||| ||||| || Sbjct 6207 ATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCAC 6148 Query 2305 ATCAGAGGAGGACTTAGCTCCCTGGATATTTGGATGGAATTGGGAGGAGCTATGAGGATG 2364 | ||| ||| ||| ||||||| || ||||||||||| || | || || ||| Sbjct 6147 GTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGA 6088 Query 2365 GATGAGATCGAAATGTCTTGCATTTCTGAATCTGGCCTTACCCTTGAACTGGATAAGGGC 2424 || |||||||| ||| ||| || || || ||| || | ||| |||||||| | Sbjct 6087 GACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCAC 6028 Query 2425 ATGGA 2429 |||| Sbjct 6027 GTGGA 6023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8588105012340