Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_011309.1 Length=2757 Score E Sequences producing significant alignments: (Bits) Value seq9745 466 3e-128 >seq9745 Length=7305 Score = 466 bits (516), Expect = 3e-128 Identities = 700/989 (71%), Gaps = 22/989 (2%) Strand=Plus/Minus Query 1600 GAGGAAGACGAACAAGACATTCTTAACCGCCCAGTTCTTTAATGCTGCGTTCCTATCTTC 1659 |||||| |||| | |||| | | |||||| ||| | ||||||||| ||||||| Sbjct 6864 GAGGAATGCGAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTC 6805 Query 1660 GTCTAAATACTCTTTATAGCTGGAAGTTGGCCCAGGATTGCAGAGGAAGATTGTCGGAAT 1719 ||| | | |||||||||| || || | || || |||||||| ||||||||||| || || Sbjct 6804 GTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCAT 6745 Query 1720 GCCCCCTTTAATTTGAACGGGCTTTCCATACTTGGTGTTACTTTGCCAGTCTCTCTGGGC 1779 || ||||||| || || ||||||||| || | | ||| ||||| || || | ||| Sbjct 6744 CCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGC 6685 Query 1780 CCCCATAAATTCCTTGAAGTGCTTGAGATAATGCGGATCAACATCATCAATGACGTTATA 1839 |||||| |||||||| || || || | |||| |||||||||| | |||||||||||| || Sbjct 6684 CCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTA 6625 Query 1840 CCATACGTCATTACTATAGACTCTTGGACTGAGATCCAAGTGACCGCATAAATAGTTGTG 1899 ||| | ||||| | || | |||| || | ||| | ||||||||||| || ||||| Sbjct 6624 CCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTG 6565 Query 1900 TGAACCCAATGACCTGGCCCACAGTGTTTTACCAGTACGACTATTACCCTCTATGACTAT 1959 || || ||||| || ||||| | |||||| ||||| | | | ||| |||| ||||| Sbjct 6564 TGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTAT 6505 Query 1960 ACTCATGGGTCTCAAAGGCCGCGCAGCGGCATCCACCACATTCTCGGCAGCCCATTCCTC 2019 |||||| |||| ||||| | ||| |||| ||| || || || || |||| || | Sbjct 6504 ACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAGTCTTG 6445 Query 2020 AAG-TTCTGCCGGAACTTGATCGAAAGNNNNNNNNNNNNNNNNNGAAACATACTCCACAG 2078 ||| ||| |||| || | | || | |||||||| ||| Sbjct 6444 AAGAATCT-CCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACATATATTGCAG 6386 Query 2079 GAGGCTCCTGTAAAAATCTATCTAAATTAGATTTTAAATTGTGAAATTGAAAAATATAAT 2138 | || |||| || | |||| ||||||| ||||| | ||||| | ||| ||||| Sbjct 6385 GTGGAGCCTGGAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAAT 6326 Query 2139 CTTTAGGAGACTTATTCTTTAA-TATATTGAGGGCCTCAATTTTTGACCCTGCGTTAATC 2197 |||| || | || ||| ||| ||| | | ||| | |||| ||||| | || | Sbjct 6325 CTTTTGG-GCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACCCAGAATTTAGG 6267 Query 2198 GCTGTGGCGTAAGCGTCATTGGCTGATTGTTGTCCTCCTC------GTGCAGATCTTCCA 2251 ||| |||||| | ||||| || |||||||| || |||| ||||||||||||| Sbjct 6266 GCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCA 6207 Query 2252 TCGATCTGAAACTCTCCCCAGTCGATGGTGTCTCCGTCCTTCTCCATATAGGACTTGACG 2311 || ||||| || |||||||| || || || ||||||| |||||| ||||| ||||| ||| Sbjct 6206 TCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACG 6147 Query 2312 T---CGCTGGAGCTTTTAGCTCCCTGGATGTTTGGATGGAATTGTGCTGACCTGGTTGGG 2368 | |||||| |||| ||||||| |||||||||||||| |||| |||||||||||| Sbjct 6146 TAGGAGCTGGA---TTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGA 6090 Query 2369 GAGACCAGATCAAAGAATCGCTGATGTTGGCACTTGTATTTTCCTTCGAACTGGATAAGA 2428 ||||| ||||| ||||||| | || ||| |||| || |||||||| |||||||| Sbjct 6089 GAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGC 6030 Query 2429 ACACGGAAGTGGGGTTCCCCATTTTGGTGGAGC-CCTCTGCGGATTGTTGTGGATTTTTT 2487 || ||| | ||||||| |||| | |||| |||||| || | || |||| || Sbjct 6029 ACGTGGAGACGAGGTTCCCTGTTTTCAT-GAGCTTCTCTGCAAATCTTGATGTATTTCTT 5971 Query 2488 AGAAGTTGGTGTTTGGAGATTT--AAGAATTGGGAAAGTGCTTCTTCTTTAGTGAGGGAG 2545 ||| || | || ||| || |||| || || ||||| ||||| || || ||| Sbjct 5970 GTTTACTGGGGTATTTAGGTTTTGAATAATT--GAGAGAGCTTCCTCTTTTGTAAGAGAG 5913 Query 2546 CACTTGGGATAAGTGAGAAAATAATTTTT 2574 || | |||||| || |||||| |||||| Sbjct 5912 CAGTGGGGATATGTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8632487983980