Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_011346.1 Length=2776 Score E Sequences producing significant alignments: (Bits) Value seq9745 524 1e-145 >seq9745 Length=7305 Score = 524 bits (580), Expect = 1e-145 Identities = 736/1025 (72%), Gaps = 26/1025 (3%) Strand=Plus/Minus Query 1577 GAAGAGTGGCTCTGTGAGGGAGACGAATTCTGCATTCTTTAATGCCCAATTCTTGAGGGC 1636 ||| | ||||| |||||| | |||| ||||||| | | ||||| ||| | || Sbjct 6879 GAATAATGGCTGGGTGAGGAATGCGAAGACTGCATTTATGAGAGCCCAGGACTTAATAGC 6820 Query 1637 TGTTTGTTTTTCCTCGTTTAAAAACTCGATGTAGCTGGAGCCTGGACCTGGATTGCAGAG 1696 || | || || |||| | |||||| | || || ||| || ||||||||||| || Sbjct 6819 TGCGTTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAG 6760 Query 1697 AAAGATAGTGGGAATCCCACCTTTAATTTGAACTGGCTTTCCGTATTTTGTGTTGCTTTG 1756 ||||| ||||| ||||| ||||||| || || |||||||||||| || | || || Sbjct 6759 GAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTG 6700 Query 1757 CCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTCAGATAATGCGGATCAACGTC 1816 ||| || |||| ||||||||||||||| ||||| || || | |||| |||||||||||| Sbjct 6699 CCAATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTT 6640 Query 1817 ATCAATGACGTTGTACCACGCGTCGTTGCTGTAAACCTTGGGACTCAAGTCTAGGTGACC 1876 |||||||||||||||||| || || ||| |||| || || || | || ||||| Sbjct 6639 ATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACC 6580 Query 1877 ACATAAATAATTGTGTGGTCCAAGAGATCTGGCCCACACTGTCTTCCCTGTACGACTAAC 1936 ||||| ||||||||||| || | ||||| ||||| | ||| ||||| || | | | Sbjct 6579 GCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTC 6520 Query 1937 GCCCTCGATAACAATTGATTTAGGTCTCAATGGCCGCGCAGCGGCACTCTTCACATTTTC 1996 || || | ||| || |||||| |||| | ||| ||||||| || ||||| Sbjct 6519 ACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTC 6460 Query 1997 TGAAACCCATGCCTCGAGTTCCTCGGGAACTCGATTGAAAGAAGAAGATAGAAATGGCGA 2056 | |||||| | | || ||| || || || || | | |||| ||| || || Sbjct 6459 TTCAACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGA 6400 Query 2057 CGTATAAA---CAGGCACCTCTGGTGC---GAAGATCCTATCTAAATTTGAACTTAAATT 2110 ||| | |||| ||| || ||| ||| |||| ||||| | | |||| | Sbjct 6399 AACATATATTGCAGG------TGGAGCCTGGAATATCATATCCAAATTAGCATTTAATCT 6346 Query 2111 ATGAAACTGTAAAATAAAATCTTTTGGGGCTAATTCCCTAATTACC-CTAAGAGCATCCT 2169 |||||| ||||| | ||||||||||| | ||||||||||| | ||||| || | || Sbjct 6345 ATGAAAACGTAAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAG-GC-TGCT 6288 Query 2170 GCTTACTTCCC-GTGTTAAGCGCCTGGGCGTAAGCATCGTTTGCTGATTGTTGACCGCCC 2228 | || ||| | || || || | |||||| |||| || || ||||||||||| || Sbjct 6287 GTTTTAGACCCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCT 6228 Query 2229 CTTG------CAGAACGTCCGTCGATCTGAAACTGCCCCCATTCCAGTGTGTCCCCGTCC 2282 |||| |||| | ||| || ||||| || | ||||| || | ||| || |||| | Sbjct 6227 CTTGTAGTTGCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGC 6168 Query 2283 TTATCAATATATGACTTGACGTCGGAGCTGGATTTAGCTCCCTGTATGTTCGGATGGAAA 2342 || || ||||| ||||| |||| ||||||||||||| ||||||||||||| ||||||||| Sbjct 6167 TTCTCGATATACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAA 6108 Query 2343 TGTGTTGATCTGGTTGGGGAGACCAGGTCGAACAATCTGTTATTTGTGCAGACGTATTTG 2402 |||||||| |||||||| ||||| || ||||| ||||||||||| ||||| ||| || Sbjct 6107 TGTGTTGACCTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTC 6048 Query 2403 CCTTCGAACTGTATAAGCACATGGAGATGAGGGCTTCC--ATCTTCGTGCAGTTCTCTAC 2460 |||||||| || |||||||| |||||| |||| |||| | ||| || |||||| | Sbjct 6047 CCTTCGAATTGGATAAGCACGTGGAGACGAGG--TTCCCTGTTTTCATGAGCTTCTCTGC 5990 Query 2461 AGACCTTAATATATTTCTTATTGACTTGAGTATTTATGCTACGAAGTTGTGAAAGTGCTT 2520 | | ||| || |||||||| || ||| | ||||||| | | ||| ||| || |||| Sbjct 5989 AAATCTTGATGTATTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAATTGAGAGAGCTT 5930 Query 2521 CGTCTTTGGTGACGGAGCAATGGGGATAAGTGAGGAAATAATTTTTGGCAGAAATTCTAA 2580 | ||||| || | ||||| |||||||| || || ||| |||||| | |||||| | || Sbjct 5929 CCTCTTTTGTAAGAGAGCAGTGGGGATATGTTAGAAAAATATTTTTAGAAGAAATGCGAA 5870 Query 2581 AACGA 2585 ||||| Sbjct 5869 AACGA 5865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8692722016920