Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_011348.1 Length=2630 Score E Sequences producing significant alignments: (Bits) Value seq9745 399 4e-108 >seq9745 Length=7305 Score = 399 bits (442), Expect = 4e-108 Identities = 715/1034 (69%), Gaps = 39/1034 (4%) Strand=Plus/Minus Query 1480 GAAGATCGCATTCTTGACAGTCCAGTTCCTGAGAGATGCGTTTTCCTCTTTGTCCAGGAA 1539 ||||| ||||| ||| || |||| | | | || |||||| | |||| ||| || || Sbjct 6855 GAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAAA 6796 Query 1540 AGCTTTATAGCTAGCACCCTCACCAGGATTGCAAAGCACGATTGATGGGATTCCACCTTT 1599 ||||||| || | || ||||||||||| | ||||| || || || ||||| Sbjct 6795 CTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTT 6736 Query 1600 AATTTGAACTGGCTTGCCGTATTTGCAATTTGACTGCCAGTCTTTTTGGGCCCCGATCAA 1659 || || || ||||| |||||| | | ||| ||||||| || ||| |||||| || || Sbjct 6735 AACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAA 6676 Query 1660 TTCTTTCCAGTGCTTTAGCTTTAGATAGTGCGGTGCGACGTCATCAATGACGTTATACTC 1719 ||| || | || |||| ||| |||| | |||| |||||||||||| ||| Sbjct 6675 TTCCTTAAAATGTTTTAA------ATAACGCGGATCAACGTTATCAATGACGTTGTACCA 6622 Query 1720 CACTTCATTC--GAAAAGACTCGACCATTGAAGTCCAGGTGTCCACTTAGATAATTATGT 1777 | ||||| | | | | | | | || || || | || ||||| ||| Sbjct 6621 GGCATCATTGTTGTACGTTTTTGGGCTTATA--TCATAATGACCGCATAAGTAATTGTGT 6564 Query 1778 GGGCCTAACGCACGAGCCCACATGGTCTTCCCTGTCCTTGAATCACCTTCTACGATGATA 1837 |||||||| | | |||||| || || ||||| || || | ||||||||||| | ||| Sbjct 6563 GGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATA 6504 Query 1838 CTCAATGGTCTCTGTGGCCGCGCAGCGGAACCTCTTCCAAAATAATCATCCGCCCACTCC 1897 |||| |||| || |||| | ||| || || | ||| | || || |||| || Sbjct 6503 CTCATAGGTCGGTGAGGCCTCCCAGAGGCAC---TCACAACGTTTTCTTCAACCCAGTCT 6447 Query 1898 TGCATCTCATCGGGAACGTTAGTGAAGG-ACGAGAGTTGAAACGGAGGAACCCACGGTTC 1956 || | || || ||||| | || | || || | ||| |||| ||| | | | Sbjct 6446 TGAAGAATCTCCGGTACGTTGTTAAATGTACTGGA-TACAAAAGGAGAAACATATATTGC 6388 Query 1957 CGG---AGCCTTTTTGAATATCCTCTCTAGATTGGAGCGGATGT----TATGATTCTGCA 2009 || ||||| ||||||| | || | ||| ||| || | ||||| | | Sbjct 6387 AGGTGGAGCCTG---GAATATCATATCCAAATT--AGC--ATTTAATCTATGAAAACGTA 6335 Query 2010 AGACGAAATCTTTTGGCTGTTCTTCCCTTAAAACCGCCATGGCAGATTGAACAGAATCTG 2069 | |||||||||| ||| |||||| | | | | | ||| | | ||| | | Sbjct 6334 AATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACCCAG 6275 Query 2070 CATTTAACGCCTTGGCATATGAATCATTAGCAGACTGCTTGCCTCCTCTAG------CAG 2123 ||||| || | || || ||||||||| || || | || ||||| | ||| Sbjct 6274 AATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAG 6215 Query 2124 ATCTGCCGTCGATCTGGAATTCTCCCCATTCCAGTGTATCTCCGTCCTTGTCGATGTAGG 2183 |||| || || ||||||||||||||||| || | ||||||||||| ||| ||||| || | Sbjct 6214 ATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACG 6155 Query 2184 ACTTGACGTCGGAGCTGGATTTAGCTCCCTGTATGTTCGGATGGAAATGTGCTGACCTGG 2243 |||| |||| ||||||||||||| ||||||||||||| ||||||||||||| |||||||| Sbjct 6154 ACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGG 6095 Query 2244 TTGGGGAGACCAGATCGAAGAATCTGTTATTCTTGCATTGGTATTTTCCTTCGAACTGTA 2303 |||| ||||| ||||||||||||||||||||| ||||| ||| || |||||||| || | Sbjct 6094 TTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGA 6035 Query 2304 TGAGCACATGGAGATGAGGCTCCCCATTCTCATGAAGCTCTCTGCAGATTTTGATGAACT 2363 | ||||| |||||| |||| |||| || |||||| |||||||| || |||||| | | Sbjct 6034 TAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATT 5975 Query 2364 TCTTGTTAACTGGTGTTTCAAGGTTTTG--TAATTGGGAAAGTGCCTCTTCTTTTGTCAG 2421 ||||||| ||||| || | |||||||| ||||| || || || || |||||||| || Sbjct 5974 TCTTGTTTACTGGGGTATTTAGGTTTTGAATAATT--GAGAGAGCTTCCTCTTTTGTAAG 5917 Query 2422 AGAGCACTGTGGATAAGTGAGGAAATAGTTTTTGGCTGAGACTTTGAAACGCTTAACCGA 2481 |||||| || ||||| || || ||| ||||| | || | ||||| | || Sbjct 5916 AGAGCAGTGGGGATATGTTAGAAAAATATTTTTAGAAGAAATGCGAAAACGAGAACTCGT 5857 Query 2482 TGGCATTTTTGTAA 2495 |||||| ||||||| Sbjct 5856 TGGCATATTTGTAA 5843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8229871026960