Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_011583.1 Length=2797 Score E Sequences producing significant alignments: (Bits) Value seq9745 479 5e-132 >seq9745 Length=7305 Score = 479 bits (530), Expect = 5e-132 Identities = 734/1037 (71%), Gaps = 16/1037 (2%) Strand=Plus/Minus Query 1622 GAACAATGGCTCGTGGAGGGTGATGAAGGTGGCATTCTTTAAAGCCCAGGCTTTAAGGGA 1681 ||| ||||||| | |||| |||| ||||| | | |||||||| |||| | Sbjct 6879 GAATAATGGCTGGGTGAGGAATGCGAAGACTGCATTTATGAGAGCCCAGGACTTAATAG- 6821 Query 1682 CTG-GTTCTTTTCCTCGTCCAGAAACTCTTTATATGATGATGTTGGGCCC-GGATTGCAG 1739 ||| |||||| || ||||| |||||||||||||| ||| |||||| || |||||||| Sbjct 6820 CTGCGTTCTTATCTTCGTCAAGAAACTCTTTATAACTTGA-GTTGGGTCCTGGATTGCAA 6762 Query 1740 AGGAAGATAGTGGGAATGCCGCCTTTAATTTGAATCGGCTTCCCGTACTTTGTATTGCTT 1799 |||||||| ||||| || |||||||||| || || ||||| ||||| || |||| Sbjct 6761 AGGAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATAC 6702 Query 1800 TGCCAGTCCCTTTGGGCCCCCATGAATTCTTTGAAGTGTTTGAGGTAGTGGGGGTCGACG 1859 ||||| || |||| ||||||||||||||| || || ||||| | || | || || ||| Sbjct 6701 TGCCAATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGATCAACG 6642 Query 1860 TCATCAATGACGTTGTACCAGGCGTCGTTGCTGTAGACCTTTGGACTAAGATCCAGGTGT 1919 | ||||||||||||||||||||| || ||| |||| ||||| || | ||| || Sbjct 6641 TTATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGA 6582 Query 1920 CCACACAAGTAGTTGTGTGGACCCAAAGAGCGGGCCCACATCGTCTTCCCCGTCCTACTA 1979 || || ||||| |||||||| || || || | ||||| || || ||||| || ||| Sbjct 6581 CCGCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCC 6522 Query 1980 TCGCCCTCGATGACGATACTAGTAGGTCTCCATGGCCGCGCAGCGGAACCCATCACGTTC 2039 || || || | || ||||| |||||| |||| | ||| || || || ||||| Sbjct 6521 TCACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTT 6462 Query 2040 TCGGAAACCCAATCTTCAAGTTCCTCAGGAACGTTAGTGAAAGAAGATGAAAGAAATGGA 2099 || |||||| |||| ||| ||| || ||||| | || | | || | ||| ||| Sbjct 6461 TCTTCAACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACTGGATACAAAAGGA 6402 Query 2100 GAAACATAAGGAGTCAGAGGCTCTTGAAAAATCCTATCTAAATTGCTATGTAAATTATGA 2159 |||||||| | | || | || || ||| |||| ||||| || ||| ||||| Sbjct 6401 GAAACATATATTGCAGGTGGAGCCTGGAATATCATATCCAAATTAGCATTTAATCTATGA 6342 Query 2160 AACTGTAAAACAAAATCTTTTGGAGCTAGTTCGCGTATTA-CATTAAGAGCCTCTGACTT 2218 || ||||| | |||||||||| | ||| | |||| | |||| || ||| || Sbjct 6341 AAACGTAAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAG-GCTGCTGTTTT 6283 Query 2219 ATTTGCTGAGTTAAGAGCCTTGGCGTAAGCGTCATTGGCTGATTGTTGTCCTCCTC---- 2274 | | || || || || | |||||| | ||||| || |||||||| || |||| Sbjct 6282 AGACCCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGT 6223 Query 2275 --GAGCAGATCGTCCGTCGATCTGAAACGTGCCCCATTGGATGGTGTCTCCGTCCTTGTC 2332 ||||||| ||| || ||||| || ||||| | || || ||||||| ||| || Sbjct 6222 AGTTGCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTC 6163 Query 2333 CATATAGGACTGGACGTCGGAGCTTGATTTAGCTCCCTGAATGTTTGGATGGAAATGTGC 2392 ||||| |||| |||| |||||| |||||| ||||||| ||||||||||||||||||| Sbjct 6162 GATATACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGT 6103 Query 2393 TGACCGGGATGGGGATATGAGGTCGAAGAATCGATGGTTGGTACAATTGTACTTGCCCTC 2452 ||||| || ||| || | || |||||||||| | || || || ||||||| || || Sbjct 6102 TGACCTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTC 6043 Query 2453 GAACTGAATGAGGGCATGCAGATGAGGTTCCCCATTTTCATGGAGTTCTCTGCAGATCTT 2512 ||| || || || | || ||| ||||||||| |||||||| ||||||||| ||||| Sbjct 6042 GAATTGGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTT 5983 Query 2513 GATGAACAATTTATTTGTTGGGGTTTGGAGTTGTCGGAT--TTGATCCAATGCCTCCTCT 2570 |||| | || ||| |||||| | || | | | || |||| | || |||||| Sbjct 5982 GATGTATTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAATTGA--GAGAGCTTCCTCT 5925 Query 2571 TTGGATAGAGAGCATTTGGGATATGTTAGGAAATAGTTTTTGGCTTTGATGCTAAAACGA 2630 || | |||||||| | |||||||||||| ||| ||||| | |||| ||||||| Sbjct 5924 TTTGTAAGAGAGCAGTGGGGATATGTTAGAAAAATATTTTTAGAAGAAATGCGAAAACGA 5865 Query 2631 CCAGCCCTTGGCATTTT 2647 | | ||||||| || Sbjct 5864 GAACTCGTTGGCATATT 5848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8753706446300