Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_011804.1 Length=2740 Score E Sequences producing significant alignments: (Bits) Value seq9745 502 4e-139 >seq9745 Length=7305 Score = 502 bits (556), Expect = 4e-139 Identities = 682/946 (72%), Gaps = 10/946 (1%) Strand=Plus/Minus Query 1638 TCCTCGTCTAGGAACTCTTTATAACTGCTGTGGGGACCAGGATTGCAGAGGAAGATTGTT 1697 || ||||| || |||||||||||||| || ||| || |||||||| ||||||||||| Sbjct 6809 TCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTG 6750 Query 1698 GGTATCCCGCCTTTAATTTGAACTGGCTTCCCGTACTTTGTGTTGGATTGCCAGTCCCTT 1757 || ||||||||||||| || || ||||| ||||| || | || | ||||| || ||| Sbjct 6749 GGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTT 6690 Query 1758 TGGGCCCCCATAAACTCTTTAAAGTGTTTGAGGAAATGCGGGTCGACGTCATCAATGACG 1817 | ||||||||| || || ||||| ||||| | || |||| || |||| |||||||||| Sbjct 6689 TTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACG 6630 Query 1818 TTATACCAGGCGTCGTTACTGTAGACCTTGGGACTCAGGTCCAGATGTCCACACAAATAG 1877 || |||||||| || || |||| || || || | || ||| || || || || Sbjct 6629 TTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAA 6570 Query 1878 TTATGTGGTCCCAGTGATCTAGCCCACATCGTCTTCCCCGTACGACTGTCTCCTTCAATT 1937 || ||||| || | |||||||||||| || || ||||| || | | || ||||| | Sbjct 6569 TTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACA 6510 Query 1938 ACTATACTTCGCGGTCTAAGGGGCCGCGCAGCGGGATCGACAACGTTATCGATGGCCCAA 1997 |||||||| |||| | |||| | ||| || | |||||||| || |||| Sbjct 6509 ACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAG 6450 Query 1998 ACTTCAAGTTCTTCTGGAACTTGATCAAAAGAAGAACGAGA-AAAAGGAGAAATATAGGG 2056 ||| ||| || || || | | ||| | | || | ||||||||||| ||| Sbjct 6449 TCTTGAAGAATCTCCGGTACGTTGTTAAATGTA-CTGGATACAAAAGGAGAAACATATAT 6391 Query 2057 AGCCGGTGGCTCCTGAAAGATCTTGCTCTGATTTGCATTTAAATTATGAAATTGTAGTAC 2116 || ||||| |||| || ||| | | ||| |||||||| ||||||| ||| Sbjct 6390 TGCAGGTGGAGCCTGGAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATA 6331 Query 2117 AAAATCTTTAGGAGCTAGTTCCTTAATGA-CTCTAAGAGCCTCTGACTTACTGCCTGCGT 2175 | ||||||| || | |||| |||| | ||||||| || ||| ||| || | | Sbjct 6330 ATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAG-GCTGCTGTTTTAGACCCAGAAT 6272 Query 2176 TAAGTGCTGCGGCGTAAGCGTCGTTTGCTGTCTGTTGTCCTCCTC------TTGCTGATC 2229 | || ||| | |||||| | || || || | ||||| || |||| |||| |||| Sbjct 6271 TTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATC 6212 Query 2230 TTCCATCGATCTGAAACTCTCCCCATTCGAGAGTGTCCCCGTCCTTGTCGATGTAGTCCT 2289 ||||||| ||||| || |||||||| || | || || |||| ||| ||||| || || Sbjct 6211 TTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACT 6152 Query 2290 TGACATCTGAGCTTGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTG 2349 | || | ||||| |||||| ||||||| ||||| ||||||||||||| ||||||||||| Sbjct 6151 TCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTG 6092 Query 2350 GGGATACCAGGTCGAAGAATCGCTGATTCTGGCACTTGTATTTCCCCTCGAATTGGATGA 2409 | || || || |||||||||| | |||| ||| |||| ||||| ||||||||||| | Sbjct 6091 GAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAA 6032 Query 2410 GCACGTGAAGATGAGGTTCCCCATTCTCGTGAAGCTCTTTGCAAATTTTGATGAATTTTT 2469 ||||||| ||| ||||||||| || || ||| ||| ||||||| |||||| |||| | Sbjct 6031 GCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCT 5972 Query 2470 TATTTGTTGGAGTTTGTAGGTTTTGGATTTGGGAAAGTGCTTCCTCTTTAGTAAGAGAGC 2529 | ||| ||| || | ||||||||| || || || ||||||||||| |||||||||| Sbjct 5971 TGTTTACTGGGGTATTTAGGTTTTGAATAATTGAGAGAGCTTCCTCTTTTGTAAGAGAGC 5912 Query 2530 ATTTTGGATAAGTCAGAAAATAATTTTTGGAATATATTTGAAAGCG 2575 | | ||||| || |||||| |||||| ||| | || |||| || Sbjct 5911 AGTGGGGATATGTTAGAAAAATATTTTTAGAAGAAATGCGAAAACG 5866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8578594375560