Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_011805.1 Length=2737 Score E Sequences producing significant alignments: (Bits) Value seq9745 286 6e-74 >seq9745 Length=7305 Score = 286 bits (316), Expect = 6e-74 Identities = 514/756 (68%), Gaps = 6/756 (1%) Strand=Plus/Minus Query 1595 GAAGATCGCATTTTTTACCGCCCAGTTTTTTAGTGCGGTGTTCTTTTCCTCGTCTAGGAA 1654 ||||| |||||| | | |||||| || | || | |||||| || ||||| || || Sbjct 6855 GAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAAA 6796 Query 1655 TTCTTTATAACTGCCAGTGGGACCAGGATTGCATAGGAAGATTGTTGGTATGCCGCCTTT 1714 ||||||||||| |||| || |||||||| ||||||||||| || || |||||||| Sbjct 6795 CTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTT 6736 Query 1715 AATTTGAACTGGCTTCCCGTACTTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAA 1774 || || || ||||| ||||| || | || | ||||| || |||| |||||||||||| Sbjct 6735 AACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAA 6676 Query 1775 CTCTTTAAAGTGTTTGAGGAAATGCGGGTCGACGTCATCAATGACGTTATACCAGGCGTC 1834 || ||||| ||||| | || |||| || |||| |||||||||||| |||||||| || Sbjct 6675 TTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATC 6616 Query 1835 GTTACTGTAGACCTTGGGACTCAGGTCCAGATGTCCACACAAATAGTTATGTGGTCCCAA 1894 || |||| || || || | || ||| || || || || || ||||| || || Sbjct 6615 ATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAA 6556 Query 1895 TGACCTAGCCCACATCGTCTTCCCCGTACGACTATCTCCCTCAATTACTATACTTCGAGG 1954 ||| |||||||| || || ||||| || | | || || || | |||||||| ||| Sbjct 6555 TGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGG 6496 Query 1955 TCTAAGGGGCCGCGCAGCGGGATCGACAACGTTATCGATGGCCCAAACTTCAAGTTCTTC 2014 || | |||| | ||| || | |||||||| || |||| ||| ||| || Sbjct 6495 TCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCTC 6436 Query 2015 TGGAACTTGATCAAAAGAAGAAGGNNNNNNNNNNNNNNCATAAACCTCCACAGGAGGTGT 2074 || || | | ||| | | | |||| | | |||| Sbjct 6435 CGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACATATATTGCAGGTGGAGCCTG 6376 Query 2075 AAAAATCCTATCTAAATTACACTTTAAATTGTGGTATTGAAAAATATAGTCTTTCGGGAG 2134 || ||| |||| |||||| ||||| | || | | ||| ||| ||||| ||| | Sbjct 6375 GAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGGGCG 6316 Query 2135 TTTTTCCCTTATAATTGCTAAAGCTGCTTCAGCTGAACCTGCATTCAGGGCCTCTGCTGC 2194 ||||||||| || || |||| |||||| || || | ||| ||||| ||||| Sbjct 6315 TTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGTA 6256 Query 2195 TGCATCATTAGCTGTCTGTTGACCTCCTC------TAGCAGATCTTCCGTCGACCTGAAA 2248 |||||||||| | |||||||| |||| | ||||||||||| || | ||| || Sbjct 6255 AACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAA 6196 Query 2249 CTGACCCCAGTCGATGTAATCATCGTCCTTCTCGATGTAGGATTTGACATCGGAACTGGA 2308 | ||||| || || ||| ||| ||||||||| || || || || | ||| ||||| Sbjct 6195 TTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTGGA 6136 Query 2309 CTTAGCTCCCTGGAAGTTTGGATGGAATTGGGTGGA 2344 ||| ||||||| | |||||||||||| || || || Sbjct 6135 TTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGA 6100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8569083738780