Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_011919.1 Length=2751 Score E Sequences producing significant alignments: (Bits) Value seq9745 592 3e-166 >seq9745 Length=7305 Score = 592 bits (656), Expect = 3e-166 Identities = 688/921 (75%), Gaps = 14/921 (2%) Strand=Plus/Minus Query 1643 TCCTCGTCCAGGAATTCTTTATAACATGAGTTGGGCCCAGGATTGCAGAGGAAGATTGTG 1702 || ||||| || || |||||||||| ||||||||| || |||||||| |||||||||||| Sbjct 6809 TCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTG 6750 Query 1703 GGTATTCCGCCTTTAATTTGAACTGGCTTCCCGTACTTGGTGTTTGATTGCCAGTCCCTT 1762 || || |||||||||| || || ||||| ||||| | | || | ||||| || ||| Sbjct 6749 GGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTT 6690 Query 1763 TGGGCCCCCATGAACTCTTTAAAGTGTTTGAGGAAATGCGGGTCGACATCATCAATGACG 1822 | |||||||||||| || ||||| ||||| | || |||| || || | |||||||||| Sbjct 6689 TTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACG 6630 Query 1823 TTGTACCACGCATCATTGCTGTACACTTTAGGGCTTAGATCTAGATGACCACATAAATAG 1882 |||||||| ||||||||| ||||| ||| ||||||| ||| |||||| ||||| || Sbjct 6629 TTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAA 6570 Query 1883 TTATGTGGGCCTAATGACCTAGCCCACATTGTTTTGCCAGTACGACTGTCTCCCTCTAAG 1942 || |||||||||||||| |||||||| |||||||| ||||| | | || || |||| Sbjct 6569 TTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACA 6510 Query 1943 ACTAAACTCAAAGGACGCAGAGGCCGCGCAGCGGCGTCCACGACATTTTCAGATACCCAT 2002 |||| ||||| ||| || |||||| | ||| ||| ||| || ||||| ||||| Sbjct 6509 ACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAG 6450 Query 2003 TCTTCAAGTTCTTCTGGAACTTGATCGAAAGAAGAAGATGAAAAAGGAGAAACATAAACC 2062 |||| ||| || || || | | || | | ||| ||||||||||||||| | Sbjct 6449 TCTTGAAGAATCTCCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACATATA-T 6391 Query 2063 TCCAAG-GGAGGTGTAAAAATCCTATCTAAATTGGCATTTAAATTATGAAATTGTAATAC 2121 | || | |||| || ||| |||| ||||| |||||||| ||||||| |||| Sbjct 6390 TGCAGGTGGAGCCTGGAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATA 6331 Query 2122 ATAATCCTTAGGTGCTAACTCCCTAATGA-CTTTAAGAGCCTCTGACTTACTGCCTGCGT 2180 |||||| || || | |||||||| | || |||| || ||| ||| || | | Sbjct 6330 ATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAG-GCTGCTGTTTTAGACCCAGAAT 6272 Query 2181 TAAGTGCTGCGGCGTAAGCGTCGTTGGCTGTTTGCTGTCCCCCTC------TTGCAGATC 2234 | || ||| | |||||| | || || || | ||| || ||||||| ||||||||| Sbjct 6271 TTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATC 6212 Query 2235 GTCCATCGATCTGAAACTCTCCCCATTCGAGGGTGTCTCCGTCCTTGTCGATGTAGGACT 2294 |||||| ||||| || |||||||| || | || ||||||| ||| ||||| || |||| Sbjct 6211 TTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACT 6152 Query 2295 TGACATCTGAGCTTGATTTAGCTCCCTGAATGTTCGGATGGAAATGTACTGACCTGCTTG 2354 | || | ||||| |||||| ||||||| ||||| |||||||||||| ||||||| ||| Sbjct 6151 TCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTG 6092 Query 2355 GGGAGACCAGGTCGAAGAATCGCTGATTCTGGCACTTGTATTTGCCCTCGAACTGGATGA 2414 | ||||| || |||||||||| | |||| ||| |||| || || ||||| ||||| | Sbjct 6091 GAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAA 6032 Query 2415 GCACGTGCAGATGAGGTTCCCCATTCTCGTGAAGCTCTCTGCAGATCTTGATGAATTTTT 2474 ||||||| ||| ||||||||| || || ||| |||||||| ||||||||| |||| | Sbjct 6031 GCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCT 5972 Query 2475 TATTTGTTGGAGTTTGTAGGTTTTG--TAATTGGGAAAGTGCCTCTTCTTTAGTAAGGGA 2532 | ||| ||| || | ||||||||| ||||| || || || || ||||| ||||| || Sbjct 5971 TGTTTACTGGGGTATTTAGGTTTTGAATAATT--GAGAGAGCTTCCTCTTTTGTAAGAGA 5914 Query 2533 GCACTTGGGATATGTGAGGAA 2553 ||| | ||||||||| || || Sbjct 5913 GCAGTGGGGATATGTTAGAAA 5893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8613466710420