Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_012041.1 Length=2757 Score E Sequences producing significant alignments: (Bits) Value seq9745 484 1e-133 >seq9745 Length=7305 Score = 484 bits (536), Expect = 1e-133 Identities = 673/936 (72%), Gaps = 14/936 (1%) Strand=Plus/Minus Query 1642 TTTTTCTCTTCATCCAAGAACTCTTTATAGCTGGAATTGGGTCCTGGATTGCAGAGGAAG 1701 || || ||||| || | ||||||||||| || || ||||||||||||||||| |||||| Sbjct 6815 TTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAG 6756 Query 1702 ATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTACCGTA-CTTCGTGTTTGATTGCCA 1760 || ||||| || |||||||||| || || ||||| ||||| |||| | || | ||||| Sbjct 6755 ATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTC-TATTATACTGCCA 6697 Query 1761 GTCCTTTTGGGACCCCATGAATTCCTTAAAGTGCTTTAAGTAGTGGGGATCGACGTCGTC 1820 || ||| || |||||||||||||||||| || ||||| || | ||||| |||| || Sbjct 6696 ATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATC 6637 Query 1821 GATGACGTTATACCATGCATCATTGCTGTAAACCCTAGGACTCAAGTCCAGATGCCCGCG 1880 |||||||| ||||| ||||||||| |||| | || || | || ||| |||| Sbjct 6636 AATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCA 6577 Query 1881 TAAATAGTTGTGTGGGCCTAAAGACCTAGCCCACATTGTCTTCCCAGTACGACTATCTCC 1940 ||| || |||||||||||||| || |||||||| ||||| |||||||| | | || || Sbjct 6576 TAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACC 6517 Query 1941 CTCAATTACTATACTTTGAGGTCTCAGGGGCCGCGCAGCGGCGTCGACAACATTTTCCGA 2000 || | |||||||| ||||| | |||| | ||| ||| ||||| ||||| Sbjct 6516 TTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTC 6457 Query 2001 CGCCCACTCTTCAAGTTCTTCTGGAACTTGATTGAAAGAAGAAGAGGAAAAAGGAGAAAC 2060 |||| |||| ||| || || || | || || | | || |||||||||||| Sbjct 6456 AACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAAC 6397 Query 2061 ATAAGGAGCTGGTGGCTCCTGAAATATCCTGTCTAGATTTGCATTTAAATTATGAAATTG 2120 ||| || ||||| |||| |||||| | || | ||| |||||||| ||||||| | Sbjct 6396 ATATATTGCAGGTGGAGCCTGGAATATCATATCCAAATTAGCATTTAATCTATGAAAACG 6337 Query 2121 TAGTACAAAATCTTTAGGAGCTAGTTCCTTAATGA-CTCTAAGAGCCTCTGACTTACTTC 2179 || | ||||||| || | |||| |||| | ||||||| || ||| ||| | Sbjct 6336 TAAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAG-GCTGCTGTTTTAGACC 6278 Query 2180 CCGCGTTAAGTGCTGCGGCGTAAGCGTCGTTGGCTGTCTGCTGCCCTCCTCTTG------ 2233 | | || || ||| | |||||| | || || || | || || || ||||||| Sbjct 6277 CAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTG 6218 Query 2234 CTGACCTTCCGTCGATCTGAAATTGGCCCCATTCGAGAATGTCCCCGTCCTTGTCGATGT 2293 | || ||||| || ||||| |||| ||||| || | | || |||| ||| ||||| | Sbjct 6217 CAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATAT 6158 Query 2294 AGGACTTGACGTCGGAGCTGGTTTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACC 2353 | ||||| |||| |||||||| |||| ||||||| ||||| ||||||||||||| ||||| Sbjct 6157 ACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACC 6098 Query 2354 TGTTTGGGGATGTGAGGTCGAAGAATCTGTTGTTTTGGCACTTGTATTTTCCTTCGAATT 2413 || |||| || || |||||||||||||| || ||| |||| || |||||||||| Sbjct 6097 TGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATT 6038 Query 2414 GGATGAGAACATGCAGGTGAGGAGTCCCATCTTCGTGGAGTTCTCTGCAGATTCTAATGA 2473 |||| || || || || |||| || | ||| || ||||||||| || | ||| Sbjct 6037 GGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGT 5978 Query 2474 ATTTTTTATTAGTAGGGGTTTGTAGGTTT--AGGAATTGGGAAAGTGCTTCTTCTTTAGT 2531 |||| || || ||||| | ||||||| | |||| || || ||||| ||||| || Sbjct 5977 ATTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAATT--GAGAGAGCTTCCTCTTTTGT 5920 Query 2532 GAGGGAGCACTTTGGATAAGTGAGAAAATAATTTTT 2567 || ||||| | ||||| || |||||| |||||| Sbjct 5919 AAGAGAGCAGTGGGGATATGTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8632487983980