Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_012118.1 Length=2764 Score E Sequences producing significant alignments: (Bits) Value seq9745 583 2e-163 >seq9745 Length=7305 Score = 583 bits (646), Expect = 2e-163 Identities = 723/992 (73%), Gaps = 8/992 (1%) Strand=Plus/Minus Query 1610 CGAAGATCGCATTCTTTAAAGCCCAATTTTTGAGTGCAGAATTCTTCTCTTCGTCCAAGA 1669 |||||| ||||| | | |||||| || | || | ||||| |||||||| | | Sbjct 6856 CGAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAA 6797 Query 1670 ACTCTTTATAGCTTGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTT 1729 |||||||||| ||||| ||||||||||||||||| |||||||| ||||| || ||||||| Sbjct 6796 ACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTT 6737 Query 1730 TAATTTGAACTGGCTTTCCGTATTTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGA 1789 ||| || || |||||||||||| || | || ||||| || |||| ||||||||||| Sbjct 6736 TAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGA 6677 Query 1790 ATTCTTTGAAGTGCTTTAGATAATGCGGATCGACGTCATCAATGACGTTGTACCAGGCCT 1849 |||| || || || |||| |||| ||||||| |||| ||||||||||||||||||||| | Sbjct 6676 ATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCAT 6617 Query 1850 CATTACTGTAGACCTTTGGACTAAGGTCTAAGTGACCACACAAATAATTATGTGGACCCA 1909 |||| |||| ||||| || | || | ||||| || || ||||| ||||| || | Sbjct 6616 CATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTA 6557 Query 1910 GTGACCTAGCCCACATCGTCTTCCCCGTACGACTATCGCCCTCTATGACAATACTTTTAG 1969 ||| |||||||| || || ||||| || | | || || |||| || ||||| ||| Sbjct 6556 ATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAG 6497 Query 1970 GTCTCAATGGCCGCGCAGCGGCATCCATCACGTTTTCAGCAGCCCAGACTTCAAGTTCTT 2029 ||| |||| | ||| |||| || |||||||| || ||||| ||| ||| | Sbjct 6496 GTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCT 6437 Query 2030 CCGGAACTTGATCAAAAGNNNNNNNNNNNNNNGGAGATACATAAACCTCCACAGGAGGTG 2089 |||| || | | ||| | ||||| ||||| | | |||| Sbjct 6436 CCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACATATATTGCAGGTGGAGCCT 6377 Query 2090 TAAAAATCCTATCTAAATTAGCATTTAAATTATGAAATTGTAATACATAATCTTTTGGAG 2149 || ||| |||| |||||||||||||| ||||||| |||| |||||||||||| Sbjct 6376 GGAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGGGC 6317 Query 2150 CTAACTCCTTAATGA-CTCTAAGAGCCTCTGACTTACTGCCTGCGTTAAGCGCTGCGGCG 2208 | ||| |||| | ||||||| || ||| ||| || | || || ||| | ||| Sbjct 6316 GTTTTTCCCTAATTATCTCTAAG-GCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCG 6258 Query 2209 TAAGCGTCGTTGGCTGATTGTTGCCCCCCTCTAG------CAGATCTTCCATCGATCTGA 2262 ||| | || || || |||||||| |||||||| | ||||||||||||| ||||| Sbjct 6257 TAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGG 6198 Query 2263 AACTCTCCCCATTCGAGGGTGTCTCCGTCCTTCTCCAGATAGGACTTGACGTCGGAGCTT 2322 || |||||||| || | || ||||||| |||||| | ||| ||||| |||| |||||| Sbjct 6197 AATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTG 6138 Query 2323 GATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGAGACCAGGTCG 2382 |||||| ||||||| ||||| ||||||||||||| |||||||||||| ||||| || ||| Sbjct 6137 GATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCG 6078 Query 2383 AAGAATCGCTGATTTTGGCACCTGTATTTCCCTTCGAACTGGATGAGCACGTGCAGATGA 2442 ||||||| | ||| ||| |||| ||||||||||| ||||| |||||||| ||| || Sbjct 6077 AAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACGA 6018 Query 2443 GGGCTCCCATCTTCGTGGAGTTCCCTGCAGATCTTGATGAATTTTTTATTGGTGGGTGTA 2502 || || | ||| || ||| ||||| ||||||||| |||| || || || ||| Sbjct 6017 GGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGTA 5958 Query 2503 TCTAGGGCTTGTATTTGGGAAAGTGCTTCTTCTTTAGTAAGAGAGCAGTGTGGGTAAGTG 2562 | |||| ||| || || || ||||| ||||| |||||||||||||| || || || Sbjct 5957 TTTAGGTTTTGAATAATTGAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATATGTT 5898 Query 2563 AGGAAATAATTTCTGGCATATATTTGAAAACG 2594 || ||| |||| | | | | || ||||||| Sbjct 5897 AGAAAAATATTTTTAGAAGAAATGCGAAAACG 5866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8654679469800