Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_012137.1 Length=2759 Score E Sequences producing significant alignments: (Bits) Value seq9745 450 2e-123 >seq9745 Length=7305 Score = 450 bits (498), Expect = 2e-123 Identities = 683/973 (70%), Gaps = 9/973 (1%) Strand=Plus/Minus Query 1598 GAAGGTTGCATTTTTTAAGGCCCAATTCTTTAATGATGTGTTTTTTCCCTCGTTGAGGAA 1657 |||| ||||||| | | ||||| ||| | | || ||| || | |||| || || Sbjct 6855 GAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAAA 6796 Query 1658 TTCATTATAACTGCTGTTCGGACCAGGATTGCACAGGAAGATTGTCGGTATCCCGCCTTT 1717 || |||||||| ||| || || |||||||| ||||||||||| || ||||||||||| Sbjct 6795 CTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTT 6736 Query 1718 AATTTGAACTGGCTTTCCGTATTTTGTGTTGGACTGCCAGTCTCTTTGGGCCCCCATGAA 1777 || || || |||||||||||| || | || ||||||| || |||| |||||||||||| Sbjct 6735 AACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAA 6676 Query 1778 CTCTTTAAAGTGTTTGAGGAAATGCGGGTCGACGTCATCAATGACGTTGTACCAGGCGTC 1837 || ||||| ||||| | || |||| || |||| ||||||||||||||||||||| || Sbjct 6675 TTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATC 6616 Query 1838 GTTACTGTATACTTTGGGACTCAGGTCCAGATGTCCGCACAAATAGTTATGTGGTCCCAA 1897 || |||| ||| || || | || ||| ||||| || || || ||||| || || Sbjct 6615 ATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAA 6556 Query 1898 TGATCTAGCCCACATCGTCTTCCCCGTTCGACTATCTCCCTCAATTACTATACTCCGAGG 1957 |||||||||||| || || ||||| |||| | || || || | ||||||||| ||| Sbjct 6555 TGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGG 6496 Query 1958 TCTAAGGGGCCGCGCAGCGGCATCGACAACGTTATCGATGGCCCAAACTTCAAGTTCTTC 2017 || | |||| | ||| |||| |||||||| || |||| ||| ||| || Sbjct 6495 TCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCTC 6436 Query 2018 TGGAACTTGATCGAAAGAAGAAGGANNNNNNNNNNNNNTATAGGGAGCCGGTGGCTCCTG 2077 || || | | || | | | ||| || ||||| |||| Sbjct 6435 CGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACATATATTGCAGGTGGAGCCTG 6376 Query 2078 AAAGATTCTATCTAGATTTGCATTTAAATTATGAAATTGTAGTACAAAATCTTTAGGAGC 2137 || || |||| | ||| |||||||| ||||||| ||| | ||||||| || Sbjct 6375 GAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGGGCG 6316 Query 2138 TAGTTCCTTAATGA-CTCTAAGAGCCTCTGACTTACTGCCTGCGTTAAGTGCTGCGGCGT 2196 | |||| |||| | ||||||| || ||| ||| || | || || ||| | |||| Sbjct 6315 TTTTTCCCTAATTATCTCTAAG-GCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGT 6257 Query 2197 AAGCGTCGTTGGCTGTCTGCTGTCCTCCTCCTG------CTGATCTTCCATCGATCTGAA 2250 || | || || || | || || || |||| || | ||||||||||| ||||| | Sbjct 6256 AAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGA 6197 Query 2251 ACTCTCCCCACTCGAGAGTGTCCCCGTCCTTGTCGATGTAGGCCTTGACATCTGAGCTTG 2310 | |||||||| || | || || |||| ||| ||||| || | ||| || | ||||| | Sbjct 6196 ATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTGG 6137 Query 2311 ATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGATACCAGGTCGA 2370 ||||| ||||||| ||||| ||||||||||||| |||||||||||| || || || |||| Sbjct 6136 ATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCGA 6077 Query 2371 AGAATCTGTTATTCGTGCAGACGAATTTGCCCTCGAACTGGATGAGCACATGGAGATGAG 2430 ||||||||||||||||||| | | || || ||||| ||||| ||||| |||||| ||| Sbjct 6076 AGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACGAG 6017 Query 2431 GGCTCCCATCTTCGTGTAACTCTCTGCAGAGTTTGATATATTTTTTATTCGAGGGTGTGT 2490 | || | ||| || |||||||| | ||||| ||||| || || || || | Sbjct 6016 GTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGTAT 5957 Query 2491 TGATGGCTTGAATTTGGGAAAGTGCTTCCTCTTTAGTGAGTGAGCACTGTGGATAAGTGA 2550 | | | |||||| || || ||||||||||| || || ||||| || ||||| || | Sbjct 5956 TTAGGTTTTGAATAATTGAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATATGTTA 5897 Query 2551 -TGAAATAGTTTT 2562 ||||| |||| Sbjct 5896 GAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8638828408500