Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_012206.1 Length=2784 Score E Sequences producing significant alignments: (Bits) Value seq9745 551 1e-153 >seq9745 Length=7305 Score = 551 bits (610), Expect = 1e-153 Identities = 707/969 (73%), Gaps = 18/969 (2%) Strand=Plus/Minus Query 1630 TGGCTCGTTGAGGGTGACGAAGGTCGCATTTTTTATAGCCCAGGCTTTTAGTGATGCATT 1689 ||||| | ||||| ||||| |||||| | | |||||||| || | | ||| || Sbjct 6873 TGGCTGGGTGAGGAATGCGAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTT 6814 Query 1690 CTTTTCCTCGTCTAGATACTCTTTATATGATGATGTTGGACCTGGATTGCAGAGGAAGAT 1749 ||| || ||||| ||| |||||||||| ||| | || ||||||||||| |||||||| Sbjct 6813 CTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGAT 6754 Query 1750 AGTGGGAATTCCACCTTTAATTTGAATGGGCTTCCCGTACTTGGTGTTGCTTTGCCAGTC 1809 ||||| || || ||||||| || || |||||| ||||| | | || ||||| || Sbjct 6753 TGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATC 6694 Query 1810 TCTTTGGGCCCCCATAAATTCTTTGAAGTGTTTGAGGTAATGGGGATCGACGTCATCAAT 1869 |||| ||||||||| ||||| || || ||||| | ||| | ||||| |||| |||||| Sbjct 6693 ACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAAT 6634 Query 1870 GACGTTATACCAAGCATCATTTGAATACACCTTTGGGCTAAGATCAAGATGCCCACACAA 1929 |||||| ||||| |||||||| ||| |||||||| | |||| ||| || || || Sbjct 6633 GACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAA 6574 Query 1930 GTAATTGTGTGGACCTAATGACCTAGCCCACATCGTCTTGCCGGTACGACTATCACCCTC 1989 |||||||||||| |||||||| |||||||| || || || || || | | ||||| || Sbjct 6573 GTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTC 6514 Query 1990 AATAACAATACTATTCGGTCTCCATGGCCGCGCAGCGGCATCGCTCACA---TTCTCAGA 2046 | ||| ||||| | |||| |||| | ||| |||| |||||| || || Sbjct 6513 TACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCA---CTCACAACGTTTTCTTC 6457 Query 2047 GACCCACTCTTCAAGTTCTTCCGGAACTTGATTAAAAGAAGAACATAAAAAAGGAGAAAC 2106 ||||| |||| ||| ||||| || | ||||| | | ||| |||||||||||| Sbjct 6456 AACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAAC 6397 Query 2107 ATAAGGAGCCGGAGGCTCCTGAAAAATTCTATCTAAATTATTATTTAAATTATGAAATTG 2166 ||| || || || |||| || || |||| |||||| |||||| ||||||| | Sbjct 6396 ATATATTGCAGGTGGAGCCTGGAATATCATATCCAAATTAGCATTTAATCTATGAAAACG 6337 Query 2167 TAATACAAAATCTTTGGGAGCTAATTCCCGTATAACC-CTAAGAGCCTCTGCCTTACTTC 2225 ||| | ||||||| || | ||||| || | | ||||| || ||| ||| | Sbjct 6336 TAAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAG-GCTGCTGTTTTAGACC 6278 Query 2226 CTGCGTTAAGCGCTGCGGCGTAAGCGTCATTGGCTGTCTGTTGCCCTCCTCTTG------ 2279 | | || || ||| | |||||| | ||||| || | ||||| || ||||||| Sbjct 6277 CAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTG 6218 Query 2280 CAGATCTCCCATCGATCTGGAACTCTCCCCATTCGAGTGTATCTCCATCCTTGTCGATGT 2339 ||||||| ||||| |||||||| |||||||| || | ||||||||| | ||| ||||| | Sbjct 6217 CAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATAT 6158 Query 2340 AGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGTATGTTTGGATGGAAATGTGCTGACC 2399 | ||||| |||| ||||||||||||| ||||||||||||||||||||||||||| ||||| Sbjct 6157 ACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACC 6098 Query 2400 TGGTTGGGGACACCAGGTCGAAGAATCTCTGATTTTGGCAGTTGTATTTGCCTTCGAACT 2459 ||||||| || || || ||||||||||| | ||| ||| |||| || |||||||| | Sbjct 6097 TGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATT 6038 Query 2460 GCAGAAGCACGTGAAGATGAGGCTGGCCATCCTCGTGAAGTTCTCTGCAGATCTTGATAT 2519 | | ||||||||| ||| |||| | | | || ||| ||||||||| |||||||| | Sbjct 6037 GGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGT 5978 Query 2520 ATTTTTTATTCGTTGGGGTTTCTAGTTTTAGA--AGTTGCTCTAGGGCTTCTTCTTTAGA 2577 |||| || || |||||| | ||| ||| || | ||| || ||||| ||||| | Sbjct 5977 ATTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAATTG--AGAGAGCTTCCTCTTTTGT 5920 Query 2578 AATAGAGCA 2586 || |||||| Sbjct 5919 AAGAGAGCA 5911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8718083715000